Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trre15g04161 | ATGCCATGGTTCCTTGGGAAACGCATTGCTGGTGAACTCTCTCTTCGGGTACAACAATTGGATGTAAAATGTGAGACCAAGACAAAGGACAATGTCTTTGTCAATGTTGTTGCTTCTATTCAATATCGTGCCTTGATAGACAAGGCCAATGATGCATTTTACAAACTTAGCAACACAAGGGGCCAAATTCAAGCTTATGTTTTTGACGTAATTAGGGCATATGTTCCAAAACTCAACTTGGATGACACCTTTGAGCAGAAAAATGAAATCGCAAAAGCTGTGGAAGAAGAGCTTGAGAAGGCTATGTCAGCTTATGGATATGAAATTGTTCAAACATTGATCGTTGATATAGAGCCAGATGAGCATGTTAAGCGGGCTATGAATGAAATCAATGCTGCTGCAAGATTGAGGATGGCAGCAAGCGATAAGGCAGAGGCAGAGAAGATATTGCAAATTAAGCGAGCGGAGGGTGAGGCTGAGTCTAAATATCTCTCTGGGCTGGGTATTGCTCGCCAGCGTCAAGCCATTGTAGATGGTTTGAGAGACAGTGTGATTGGATTTTCAGTTAATGTACCAGGGACAACTGCTAAAGATGTCATGGATATGGTCCTTGTCACTCAATACTTTGACACGATGAAAGAAATTGGTGCTGCTTCCAAGTCTTCTGCTGTGTTCATTCCACATGGACCTGGTGCTGTTCGTGATGTCGCTAGCCAAATTCGTGATGGACTTCTCCAGGGTTCTCATTCTCATCAGTAG | 759 | 0.4308 | MPWFLGKRIAGELSLRVQQLDVKCETKTKDNVFVNVVASIQYRALIDKANDAFYKLSNTRGQIQAYVFDVIRAYVPKLNLDDTFEQKNEIAKAVEEELEKAMSAYGYEIVQTLIVDIEPDEHVKRAMNEINAAARLRMAASDKAEAEKILQIKRAEGEAESKYLSGLGIARQRQAIVDGLRDSVIGFSVNVPGTTAKDVMDMVLVTQYFDTMKEIGAASKSSAVFIPHGPGAVRDVASQIRDGLLQGSHSHQ | 252 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trre15g04161 | 252 | SUPERFAMILY | Band 7/SPFH domain | 13 | 137 | IPR036013 | - | |
| Trre15g04161 | 252 | CDD | SPFH_like_u4 | 3 | 244 | - | - | |
| Trre15g04161 | 252 | SMART | PHB_4 | 4 | 131 | IPR001107 | - | |
| Trre15g04161 | 252 | PANTHER | STOMATIN-LIKE PROTEIN 2, MITOCHONDRIAL | 1 | 249 | - | - | |
| Trre15g04161 | 252 | Coils | Coil | 84 | 104 | - | - | |
| Trre15g04161 | 252 | FunFam | Hypersensitive-induced response protein 1 | 7 | 133 | - | - | |
| Trre15g04161 | 252 | Gene3D | Band 7 domain | 9 | 133 | IPR036013 | - | |
| Trre15g04161 | 252 | Pfam | SPFH domain / Band 7 family | 8 | 148 | IPR001107 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Trre15g04161 | Trre-Chr15 | 52241388 | 52243223 | Tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Trre15g04161 | - | - | csav:115710008 | 456.447 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Trre15g04161 | 15 | 52241388 | 52243223 | Trre15g04161 | 15 | 52241388 | 52243223 | ECH |