Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g04116 ATGTTGTCCCTAAATATGACTGAGATGTGGACAAGAATGGGATCAACCTTAGCAAGTTTAATGTTCATTTGGGCTATCATAAGACAATATTGTCCATACCAACTTGTACGTTTCTTTGAAAAATATAGTCACAGAATCATGGACTATTTCTATCCTTACATAAGAATCTCATTCCATGAATTCTTAGGTGATAATAGACTCAAAAGAAGTGATGCTTATGGAGCTGTTGAAGCTTATCTCAGTGCTAACACATCAAAGAGTGCAAAAAGACTCAAAGCTGAGATAGGAAAAGATAGCACAAACTTGGTCTTAACAATGGATGAATATGAAAGAGTAACTGATGATTACAAAGGTGTAAAAGTTTATTGGGTTTGTAGCAAAGTTATTATGTCTGGTTCAAGATCCATGCCTTATTATCAAGAACAAGAGAAAAGATTCTACAAGTTAACTTTTCACAATAAGTATAGAGATACAATAACTGGTTCATATTTAGATCATGTTATGAAGGAAGGGAAAGAGATTCGTTTGAGGAACAGACAGAGGAAATTGTACACAAATAGTCCTGGTTATAAATGGCCAAGTTATAAGCAAACTATGTGGAGTCACATTGTTTTTGAACATCCTGCAACATTTGAAACAATGGCTATGGAGCCAGAGAAAAAAAAGGAGATTATTCAAGATTTGGTTACTTTTAGTAAAAGTAAGGATTTTTATGCTAGGATTGGAAAAGCTTGGAAAAGGGGTTATTTACTATTTGGTCCTCCAGGTACTGGAAAATCAACAATGATTGCTGCTATGGCTAATTTGTTGGGTTATGATGTTTATGATTTGGAGTTAACTGCAGTGAAAGATAACACTGAATTGAGAAAGCTTTTGATTGAAACAACTAGTAAGTCAATAATTGTTATTGAAGATATTGATTGTTCACTTGATCTTACAGGTCAAAGAAAGAAAAAAGGTGAAAGTAAGTTTTTTTCTGATGATGAGAATGAAAATAATAAGGTGAATAATAATAATATTGATGTTTTAAGGAAGGAGGTGAAGGAAGAAGGAAGTGGGGGTGTGAATAGCAAAGTTACACTTTCAGGGCTATTGAATTTCATTGATGGGATTTGGTCAGCTTGTGGAGGTGAAAGGTTGATTATTTTCACAACTAATTATGTTGAGAAACTTGATCCTGCATTAATTAGGAGGGGTAGAATGGACAAACATATTGAACTTTCTTATTGTAGTTTTAATGGTTTTAAAGTGCTTGCTAATAATTACTTAAAGGTTGAGAATCATGAATTATTTGAGATTATTGAGAAGCTAATTAGTGAAGTGAAGATTACACCTGCTGATGTTGCTGAGAATCTTATGCCTAAGTCTCCTATGGATGATGCTCATAAGTGTCTTTCAAATTTGATTGAAGCTCTTGAGGAAGTGATGAGACAAAGTAGTAGTAGTAAAATGAAGGAACAAGGTGAAGAAGTGGAACACATTGGTGCTATTAAAGAAAATAGCTAA 1506 0.3353 MLSLNMTEMWTRMGSTLASLMFIWAIIRQYCPYQLVRFFEKYSHRIMDYFYPYIRISFHEFLGDNRLKRSDAYGAVEAYLSANTSKSAKRLKAEIGKDSTNLVLTMDEYERVTDDYKGVKVYWVCSKVIMSGSRSMPYYQEQEKRFYKLTFHNKYRDTITGSYLDHVMKEGKEIRLRNRQRKLYTNSPGYKWPSYKQTMWSHIVFEHPATFETMAMEPEKKKEIIQDLVTFSKSKDFYARIGKAWKRGYLLFGPPGTGKSTMIAAMANLLGYDVYDLELTAVKDNTELRKLLIETTSKSIIVIEDIDCSLDLTGQRKKKGESKFFSDDENENNKVNNNNIDVLRKEVKEEGSGGVNSKVTLSGLLNFIDGIWSACGGERLIIFTTNYVEKLDPALIRRGRMDKHIELSYCSFNGFKVLANNYLKVENHELFEIIEKLISEVKITPADVAENLMPKSPMDDAHKCLSNLIEALEEVMRQSSSSKMKEQGEEVEHIGAIKENS 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g04116 501 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 141 470 IPR027417 -
Trre15g04116 501 ProSitePatterns AAA-protein family signature. 379 398 IPR003960 GO:0005524|GO:0016887
Trre15g04116 501 Pfam ATPase family associated with various cellular activities (AAA) 250 408 IPR003959 GO:0005524|GO:0016887
Trre15g04116 501 Pfam Domain associated at C-terminal with AAA 32 125 IPR025753 -
Trre15g04116 501 Gene3D - 406 485 - -
Trre15g04116 501 CDD RecA-like_BCS1 224 407 - -
Trre15g04116 501 Gene3D - 201 405 IPR027417 -
Trre15g04116 501 FunFam AAA-ATPase ASD, mitochondrial 201 405 - -
Trre15g04116 501 MobiDBLite consensus disorder prediction 479 501 - -
Trre15g04116 501 PANTHER BCS1 AAA-TYPE ATPASE 13 481 - -
Trre15g04116 501 SMART AAA_5 245 411 IPR003593 GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g04116 Trre-Chr15 51668715 51670220 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g04116 210 407 Miscellaneous Gene Families AT5G58870 28.788 4.22e-11 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g04116 - - gmx:100798981 787.719
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g04116 15 51668715 51670220 Trre15g04116 15 51668715 51670220 ECH