Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g04102 ATGGGAAGTGAAGAAGCTAAAGTTTCAGAACAAAAATGGCGTTACACATGGGAATCACAATCCCACACACCAACACTACGCTTACTCCTTTACCCATTCTCCAAAACCCTAATAAACCCTTCTCTAAATCTCACCGTTCATCTTCATTCACCACCTTCATTCCTCACTCTCACTTCCTCCTCCGCCGCCGCTCTTTCCGTTAGGGTTCCGATTCCCAATGTCTTACTCGACATCGATTTTCCTCCCACCGTCCGATCATTCTCCGACCATATCGAAGTCAAACTTCTTCTCTTACTCCCCGTTGATCATCCTGCTCTCTCCGCACTCCATCAAACCTTGCCGTTACCTCAACCTCTCTTAATGGATTATGATGTAGATAAATTGTCTTCAGCTGGAGAAGTTGAATTTGTTTGTAGAAGTTGCGCATACAATTTGACCAAAAAGCCTATTAGGAATTTTGTTGAAAAGCCATCAGCGAATTGGAGGGAAATAGCTGACAATTGGTTTGGGACTTGTTGTTGTTCGTTTGGAGGTATAAGCGAGAAGCTGGTGACGAGGTATGTGAATTCTCACACGTGCACACAGGGGATGTGCTTGTTGAGCTCTACATCTATCACTTTTTGCAAGGATGATCTTGTGGAAAGTGACTTTCCTGAACGTTGTGGACAGCTGCATGAGTGTAGTTATGTAGCAGATGATTCTGGAGGCGATGCTGTTAGCGAAGGCGCTGGAAACTTTGTGCTGGATGAGGAAAGAACTTCAGCCTGCAGTGATGCTGGTGAAGCGAACTGTGTCTTTGATGAAAATGCAAGGGTTGCCCATCCTGAGAATGGACAGCTTTCTCTGAATTTTAACGAAGTTGCTAAGAATGAACCTGATTGCAGTGGCTTTTCTCGTATATGTCTACATTTGAATGACACTAAAGATGTGACCAACATTCCTAGTTGCTGTACTCAGACAAGCACTCTAGAAGATGAAGATGGTGAACATCATTTATCTACAAATGCAAGGAAGATTGAAACTGTGGAAATTGTGGGCATTCAGAAGACTTTACTTAATGGTTTTCTTGAAGATGTTTTCATGGCCAGATCATCAAATTTGTCGAAGGATATTTATTGGCATGAATTTACATGCCCGCAATGCACAACGCTCCTTGGAGCCTACCCATGTTGTGAGGGTTGTGCGCCTGTGGATGGAGGAGTACGATTGTTCAAATGCTATATTTCAACCTGTGTGCCAGTTTTAGGATCAGGGGACGTTTTCAGCAAGTACACAGTAGACAAAATGTTTGCAAATCGGTTGATGGAGTGTGCAAATGATGAGTCAACATTTCGGTTTGTAGTTAGAGATCTGACAACCAAATCTCCTGTCCTGCAAATCATTCTCCTAAATCCAGATACTTGGTCCTGTTCTGGTAATTGTTCTGGCACAGAGGACAAAGACCCAGATCCTAAATTACAGTTACGGCCGGTCATCAAGGTCCTTTTTTCTGATTCTGAAGCTACAACAGAATCTCAGTTAAGGATGATTGAGGAATGGGCAGCAAAGAATTCAGCTGAAGACATTTTTATGCTATCTTATCAAATACAAGACCTGGTGGATGCATTAATGTCAGCAAAAAATATGTATCCACCTTCATGTGCTTCTCTTCATGGTTTAATTTTGTCATCTAACGGTAGTAACTACGACTCATTTGGTAACCAAAAGTGTGACCAATCATCTGGCTGA 1728 0.4248 MGSEEAKVSEQKWRYTWESQSHTPTLRLLLYPFSKTLINPSLNLTVHLHSPPSFLTLTSSSAAALSVRVPIPNVLLDIDFPPTVRSFSDHIEVKLLLLLPVDHPALSALHQTLPLPQPLLMDYDVDKLSSAGEVEFVCRSCAYNLTKKPIRNFVEKPSANWREIADNWFGTCCCSFGGISEKLVTRYVNSHTCTQGMCLLSSTSITFCKDDLVESDFPERCGQLHECSYVADDSGGDAVSEGAGNFVLDEERTSACSDAGEANCVFDENARVAHPENGQLSLNFNEVAKNEPDCSGFSRICLHLNDTKDVTNIPSCCTQTSTLEDEDGEHHLSTNARKIETVEIVGIQKTLLNGFLEDVFMARSSNLSKDIYWHEFTCPQCTTLLGAYPCCEGCAPVDGGVRLFKCYISTCVPVLGSGDVFSKYTVDKMFANRLMECANDESTFRFVVRDLTTKSPVLQIILLNPDTWSCSGNCSGTEDKDPDPKLQLRPVIKVLFSDSEATTESQLRMIEEWAAKNSAEDIFMLSYQIQDLVDALMSAKNMYPPSCASLHGLILSSNGSNYDSFGNQKCDQSSG 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g04102 575 PANTHER E3 UBIQUITIN-PROTEIN LIGASE E3D FAMILY MEMBER 3 556 IPR019193 -
Trre15g04102 575 Pfam HECT-like Ubiquitin-conjugating enzyme (E2)-binding 120 547 IPR019193 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g04102 Trre-Chr15 51556617 51560476 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g04102 - - cam:101505599 863.218
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g04102 15 51556617 51560476 Trre15g04102 15 51556617 51560476 ECH