Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g04101 ATGTCTTTGTCTGGACCCGAATCTCCCAGGCCAGCTCTTGAAAAGATTGATCGCGTTGAATCTTTGAAGAAGAAGCTGAGAGATTCCCTCACTAGGAGGAATAGGCGAAGCAGTAGCAAGGTTATGTCGGTTGAAATCGAAGATGTCCGCAATGCTGATGATTTGAAAGCCGTTGATGAATTCCGTCAGGCTCTCGTGTTGGATGAATTGCTCCCTGAGAAGCATGATGACTATCATATGCTGCTTAGATTCCTTAGGGCAAGGAAATTTGACATTGAGAAATCAAAGCAAATGTGGTCTGACATGCTTAAGTGGAGGAAGGAATTTGGTGCTGACACTATTGTTGAGGACTTTGAATTCAAGGAACTTGAGGATGTGATGCAATATTATCCTCATGGACATCATGGAGTAGATAAGGAAGGAAGACCAATTTACATTGAGAGGTTGGGACAAGTTGATGCCACCAAGTTGATGCAAGTCACAACCATGGATCGTTACATCAAATACCATGTCAAGGAGTTTGAGAGAACTTTTGATCTCAAATTTGCAGCTTGTTCCATTGCTGCAAAGAAACACATTGATCAAAGTACCACCATTTTGGATGTGCAAGGAGTGGGGCTTAAGAACTTCAACAAACAAGCAAGAGATCTTATCACGAGCCTTCAGAAGATTGACGGTGACAATTATCCTGAAACCTTGAACCGCATGTTCATCATCAATGCAGGTTCTGGATTCAGAATGTTGTGGAACACTGTTAAATCTTTCCTTGACCCAAAGACCACATCAAAAATCCATGTTCTTGGCAACAAGTACCAAAGCAAATTGCTTGAAATAATTGATGCAAGCGAATTGCCAGAGTTCTTAGGAGGTACTTGTACCTGTGCTGATCAAGGAGGCTGCATGCGTTCTGATAAGGGTCCATGGAAGGATCAAGACATTTATCGGATGGTTCAGAATGGCGAACACAAATGCTCAACGAAATGTGAGGTTCCTATCGTGGAAGAGAAAACACCTAAGGTAAGCGAGGCTGCCAAAATGGAGGCAGTTTTCACTGCACAATTGTCTTCTGCACAAATGAATCCTGTCCTTGCCAAGGTCCCTTCTGCAAAACCTAGCAACTACGAGGAATTTGTCGTCCCTGTGGCCGATAAAACTGTTTGGAAGAAGGTGGACGCAAATGAGACATATGCAGTATCAAAAGCTGTAGTGGAAGCTTTCACGATGCCTGATTCGTGCAAGATTCACGAAAAAGTGAACTCACAGATTTTCACCGGTGTGATGGCCTTTGTGATGGGCATAGTAACAATGGTGAGGATGACACGAAACATGCCGAAGGTGCTCACTGATGCCAACTTCTACTCAAATTCTGTATACTCCGGTGAGGACTATAAAGCCGAAGTCCCTTGTGAACAAATGACTAACCCTACCATTTCTGCTCAAGAGTTTATGACTGTGATGAAACGCATGGCCGAGTTGGAAGCTAAAATGGGCAACATGAACCCAACTACTTGCATGCCACCCGAGAAGGAGGAAATGCTTAATGCTGCAATATGTCGCGCTGATGCTCTTGAGCAAGAACTTATGGCAACCAAGAAGGCTTTGGAGGATTCACTTGCCAAGCAAGAGGAGCTTTCGGTATACATTGAGAAAAAGAAAAATAAGAAGAAGTCATTGTTTGCTTGGCCAGCATGA 1692 0.435 MSLSGPESPRPALEKIDRVESLKKKLRDSLTRRNRRSSSKVMSVEIEDVRNADDLKAVDEFRQALVLDELLPEKHDDYHMLLRFLRARKFDIEKSKQMWSDMLKWRKEFGADTIVEDFEFKELEDVMQYYPHGHHGVDKEGRPIYIERLGQVDATKLMQVTTMDRYIKYHVKEFERTFDLKFAACSIAAKKHIDQSTTILDVQGVGLKNFNKQARDLITSLQKIDGDNYPETLNRMFIINAGSGFRMLWNTVKSFLDPKTTSKIHVLGNKYQSKLLEIIDASELPEFLGGTCTCADQGGCMRSDKGPWKDQDIYRMVQNGEHKCSTKCEVPIVEEKTPKVSEAAKMEAVFTAQLSSAQMNPVLAKVPSAKPSNYEEFVVPVADKTVWKKVDANETYAVSKAVVEAFTMPDSCKIHEKVNSQIFTGVMAFVMGIVTMVRMTRNMPKVLTDANFYSNSVYSGEDYKAEVPCEQMTNPTISAQEFMTVMKRMAELEAKMGNMNPTTCMPPEKEEMLNAAICRADALEQELMATKKALEDSLAKQEELSVYIEKKKNKKKSLFAWPA 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g04101 563 PRINTS Cellular retinaldehyde-binding protein signature 249 268 - -
Trre15g04101 563 PRINTS Cellular retinaldehyde-binding protein signature 282 291 - -
Trre15g04101 563 PRINTS Cellular retinaldehyde-binding protein signature 80 102 - -
Trre15g04101 563 Coils Coil 513 544 - -
Trre15g04101 563 CDD SEC14 123 291 IPR001251 -
Trre15g04101 563 Gene3D - 19 109 - -
Trre15g04101 563 FunFam SEC14 cytosolic factor 110 322 - -
Trre15g04101 563 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 18 552 - -
Trre15g04101 563 Pfam CRAL/TRIO, N-terminal domain 73 101 IPR011074 -
Trre15g04101 563 SUPERFAMILY CRAL/TRIO N-terminal domain 52 118 IPR036273 -
Trre15g04101 563 SMART sec14_4 122 293 IPR001251 -
Trre15g04101 563 SMART CRAL_TRIO_N_2 77 102 IPR011074 -
Trre15g04101 563 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 122 296 IPR001251 -
Trre15g04101 563 SUPERFAMILY CRAL/TRIO domain 122 318 IPR036865 -
Trre15g04101 563 Gene3D - 110 321 IPR036865 -
Trre15g04101 563 Pfam CRAL/TRIO domain 128 290 IPR001251 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g04101 Trre-Chr15 51551669 51555618 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g04101 56 287 Acyl Lipid Metabolism Gene Families AT5G47730 27.801 2.84e-20 90.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g04101 K26544 - gmx:100785716 884.789
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g04101 15 51551669 51555618 Trre15g04101 15 51551669 51555618 ECH
Trre7g02774 7 24047739 24048161 Trre15g04101 15 51551669 51555618 ECH