Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g04088 ATGAAGAACCTCACTTTTCTTGCAGCTTCAACTTCAACCTCAACAACACAACAACAATTCCTCTTTCAAATTCACCATCGCTCTTTCTTTGCCGTTGGATTCTTCGCCACCCGAACCACCTTCCTTCCCAACCGAACCACCACCGAATTACCGCCACATCTTTGTTGCCGAACCAAACAATGTCGCTCCAAAGCAGTTACCACAAAACAAGAGCTTCTTGCAGCACTTCAGAAACAAGAAGAAGAAGAAGCTTTGTATTCGGATGATGACACATCCTTCTTATCCCTAAGCATGAAACCGGACCGGAGTTTGGGCTTGCTGGATGATTATGAGACTGAGGAACTCGATTTTGATCCTAACCACCGAAGTGGATATGTGGCTTTACTTGGCATGCCAAATGTTGGGAAGAGTACACTGGCAAACCAAATGGTTGGCCAGAGGTTGTCAATAGTTACAGATAAACCTCAAACGACAAGGCATCGAGTTCTTTGTATATGTTCTGGCTCCGATTATCAGATGGTACTTTATGATACTCCCGGTGTTCTACAAGAGCAAAGGCACAAGTTGGATTCAATGATGATGCAAAATGTTCGCAGTGCTGCAGTTAACGCTGACTGTGTATTGATTCTCGTAGATGCATGTAAAGCGCCTGAAAAAATTGATGAAGTGTTAGAAGGCATGGGAGACCACAAAGATAAAGCCCCCGTCCTATTGATTATGAACAAGAAGGATCTTATCAAACCTGGGGAAGTTGCAAAGAAACTTGAGTGGTATACAAAATTTACTGATGTTGACGAGGTTATACCAGTTAGTGCCAAGTATGGTCATGGTGTTGAAGATGTCAAGAACTGGATACTATCGAAGCTTCCTAATGGACCAGCTTATTTTCCAAAGGACATTATCAGTGAGCATCCAGAAAGATTTTTTGTAGCTGAAATTGTTAGAGAAAAGATTTTTTTGCAGTATCGAAAGGAAATCCCCTATTGTTGTCAGGTGAATGTTAAAAGCTATAAGGCTCGACCAAATGCAAAAGATTTTATACAGGTTGAGATTTTGGTTGAGAGAAACTCGCAGAAACCTGTCGTTATTGGAAAAAACGGAAAAGCTTTGAAACTGCTTGCAACAGCTGCACGCCTTGATATTGAAGATTTTCTACAGAAGAAAGTTTATCTCGAGATTCAAGTAAAGGTTAAAGAAAATTGGCGACAAGACGAAGGGTTTCTCAAGCACAGTGGTTATGGAGGTCAAATAGGTGTTGTATGA 1263 0.4133 MKNLTFLAASTSTSTTQQQFLFQIHHRSFFAVGFFATRTTFLPNRTTTELPPHLCCRTKQCRSKAVTTKQELLAALQKQEEEEALYSDDDTSFLSLSMKPDRSLGLLDDYETEELDFDPNHRSGYVALLGMPNVGKSTLANQMVGQRLSIVTDKPQTTRHRVLCICSGSDYQMVLYDTPGVLQEQRHKLDSMMMQNVRSAAVNADCVLILVDACKAPEKIDEVLEGMGDHKDKAPVLLIMNKKDLIKPGEVAKKLEWYTKFTDVDEVIPVSAKYGHGVEDVKNWILSKLPNGPAYFPKDIISEHPERFFVAEIVREKIFLQYRKEIPYCCQVNVKSYKARPNAKDFIQVEILVERNSQKPVVIGKNGKALKLLATAARLDIEDFLQKKVYLEIQVKVKENWRQDEGFLKHSGYGGQIGVV 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g04088 420 Hamap GTPase Era [era]. 121 413 IPR005662 GO:0003723|GO:0005525
Trre15g04088 420 Gene3D - 118 300 IPR027417 -
Trre15g04088 420 Pfam KH domain 325 402 IPR004044 GO:0003723
Trre15g04088 420 SUPERFAMILY Prokaryotic type KH domain (KH-domain type II) 298 413 IPR009019 GO:0003723
Trre15g04088 420 CDD Era 121 289 IPR030388 GO:0005525
Trre15g04088 420 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 126 323 IPR027417 -
Trre15g04088 420 PANTHER GTPASE ERA 79 405 IPR005662 GO:0003723|GO:0005525
Trre15g04088 420 Pfam 50S ribosome-binding GTPase 126 242 IPR006073 GO:0005525
Trre15g04088 420 Coils Coil 62 89 - -
Trre15g04088 420 FunFam GTPase Era 302 416 - -
Trre15g04088 420 Gene3D - 302 417 IPR015946 -
Trre15g04088 420 ProSiteProfiles Type-2 KH domain profile. 322 399 IPR004044 GO:0003723
Trre15g04088 420 NCBIfam small GTP-binding protein domain 126 283 IPR005225 GO:0005525
Trre15g04088 420 FunFam GTPase Era 119 301 - -
Trre15g04088 420 NCBIfam GTPase Era 124 396 IPR005662 GO:0003723|GO:0005525
Trre15g04088 420 ProSiteProfiles Era-type guanine nucleotide-binding (G) domain profile. 122 291 IPR030388 GO:0005525
Trre15g04088 420 CDD KH-II_Era 311 397 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g04088 Trre-Chr15 51424005 51429638 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g04088 K03595 - gmx:100815820 575.089
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g04088 15 51424005 51429638 Trre15g04088 15 51424005 51429638 ECH