Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g04047 ATGTTCCTTCTTAGAAGACAAAATCAGAATCAGCAGGAGAATGGTTCGTCGAATAATGATGCTAAGTTGGCTGAACTAAAAGATGCTATTGGGCCTTTATCTGGGCGCCGATTGAAGTATTGCACAGATCCATGTTTAAGGAGATATTTAGAAGCACGGAACTGGAATGTTGATAAAGCCAAGAAAATGCTGGAGGAATCATTCAAGTGGAGGTCTACTTATAAGCCTGAGGAAATCCGATGGGCTGAAGTAGCACATGAGGGAGAGACGGGAAAAGTCTCCAGAGCTAACTTTCATGATAGACTTGGGAGGACAGTGCTTATTATGAGACCAGGGATGCAGAACACAGCATCAGAAGAAAATAATATCAAGCATTTAGTGTATCTGTTGGAAAATGCCGTACTTAATCTTTCTGAAGGTCAAGAACAAATGTCATGGTTGATAGACTTCACAGGATTTTCATTTAGCACAAAGCTTTCTATTAAAACTGCTCGTGATATTATTCAAATCTTACAAAACCACTATCCGGAAAGGCTTGGTATAGCTTTTCTGTACAATCCACCAAGAATATTTCAGGCTTTCTTTAAGGCTGTAAAATACTTCCTGGATCCCAAGACAGCCCAGAAGGTGAAGTTTGTTTATCCTAACAATAAGGACAGTGTGGAGCTGATGAAATCACTCTTCGACGTGGATAATCTTCCTAGTGAATTTGGTGGAAAAGCTACTTTAAAGTATGACCATGAAGAGTTCTCGCGGTTGATGACTGAGGATGATGTGAAAACTGCCAAGTTCTGGGGACTTGAAGATGAGAAGCCCTTCACCACTAAGAATGGCCATTCTGGGGCTGAGGTAGCACCTGAACCTGTGGCCAGTATAGTTAGTTGA 885 0.4124 MFLLRRQNQNQQENGSSNNDAKLAELKDAIGPLSGRRLKYCTDPCLRRYLEARNWNVDKAKKMLEESFKWRSTYKPEEIRWAEVAHEGETGKVSRANFHDRLGRTVLIMRPGMQNTASEENNIKHLVYLLENAVLNLSEGQEQMSWLIDFTGFSFSTKLSIKTARDIIQILQNHYPERLGIAFLYNPPRIFQAFFKAVKYFLDPKTAQKVKFVYPNNKDSVELMKSLFDVDNLPSEFGGKATLKYDHEEFSRLMTEDDVKTAKFWGLEDEKPFTTKNGHSGAEVAPEPVASIVS 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g04047 294 FunFam Phosphatidylinositol transfer protein 3 3 273 - -
Trre15g04047 294 PANTHER GH16843P 8 270 - -
Trre15g04047 294 CDD SEC14 99 240 IPR001251 -
Trre15g04047 294 PRINTS Cellular retinaldehyde-binding protein signature 45 67 - -
Trre15g04047 294 PRINTS Cellular retinaldehyde-binding protein signature 231 240 - -
Trre15g04047 294 PRINTS Cellular retinaldehyde-binding protein signature 162 183 - -
Trre15g04047 294 SUPERFAMILY CRAL/TRIO domain 82 258 IPR036865 -
Trre15g04047 294 Pfam CRAL/TRIO, N-terminal domain 42 66 IPR011074 -
Trre15g04047 294 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 81 245 IPR001251 -
Trre15g04047 294 MobiDBLite consensus disorder prediction 1 21 - -
Trre15g04047 294 SUPERFAMILY CRAL/TRIO N-terminal domain 16 82 IPR036273 -
Trre15g04047 294 SMART CRAL_TRIO_N_2 42 67 IPR011074 -
Trre15g04047 294 Gene3D - 3 278 IPR036865 -
Trre15g04047 294 Pfam CRAL/TRIO domain 98 239 IPR001251 -
Trre15g04047 294 SMART sec14_4 87 242 IPR001251 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g04047 Trre-Chr15 50994748 50997407 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g04047 46 234 Acyl Lipid Metabolism Gene Families AT1G55840 27.317 1.28e-10 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g04047 K26544 - gmx:100800024 491.886
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g04047 15 50994748 50997407 Trre15g04047 15 50994748 50997407 ECH