Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g04004 ATGGCTAGCATTCTAAAACCATCCAAGTGGTTCTCTAGCAAAGGTCTTAAGCTTAGATCAAGATCTTCCAATTCATCATCACTATGCTCTCCAAAATCCCCAATGAATTATAACAAAAATGAAGATGATAAAGGATTAAGAGAGGTTTTCAAATACTTTGATGGTGATGGAGATGGAAAAATTTCAGCCTATGAATTAAGGTCATATTTTGGGTCAATTGGAGAGCACATGTCACATGAAGAAGCCGAAAGGGTGATTCGGTATATCGATACCGATGGCGATGAATTGTTAGATTTTAATGATTTCATTAAGTTGATGAAAGGTGAAGAAGGAATGGAAAATGATAAAGATTTAAGAAAGGCTTTTGAGATGTTTGTTTGGGAGGAGAAAGAAGATTGTATTACTCCAAAAGGGTTGCAAAGGATGTTGCAACGTCTTGGAGATGATAGGTCTTATGAAGAGTGTGTTGTGATGATTGATGCATTTGATATAGATCATAATGGGGTTCTTGATTTCAATGAGTTCCATCAAATGATGGTTTAA 543 0.3554 MASILKPSKWFSSKGLKLRSRSSNSSSLCSPKSPMNYNKNEDDKGLREVFKYFDGDGDGKISAYELRSYFGSIGEHMSHEEAERVIRYIDTDGDELLDFNDFIKLMKGEEGMENDKDLRKAFEMFVWEEKEDCITPKGLQRMLQRLGDDRSYEECVVMIDAFDIDHNGVLDFNEFHQMMV 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g04004 180 ProSiteProfiles EF-hand calcium-binding domain profile. 150 180 IPR002048 GO:0005509
Trre15g04004 180 CDD EFh 46 107 IPR002048 GO:0005509
Trre15g04004 180 SMART efh_1 45 73 IPR002048 GO:0005509
Trre15g04004 180 SMART efh_1 154 180 IPR002048 GO:0005509
Trre15g04004 180 SMART efh_1 81 109 IPR002048 GO:0005509
Trre15g04004 180 ProSitePatterns EF-hand calcium-binding domain. 54 66 IPR018247 -
Trre15g04004 180 MobiDBLite consensus disorder prediction 13 41 - -
Trre15g04004 180 FunFam Calmodulin 1 30 109 - -
Trre15g04004 180 Gene3D - 13 112 - -
Trre15g04004 180 Pfam EF-hand domain pair 132 180 IPR002048 GO:0005509
Trre15g04004 180 PANTHER CALCIUM BINDING PROTEIN 41 106 - -
Trre15g04004 180 SUPERFAMILY EF-hand 37 179 IPR011992 -
Trre15g04004 180 Gene3D - 113 180 - -
Trre15g04004 180 MobiDBLite consensus disorder prediction 15 36 - -
Trre15g04004 180 ProSiteProfiles EF-hand calcium-binding domain profile. 41 76 IPR002048 GO:0005509
Trre15g04004 180 Pfam EF-hand domain pair 45 107 IPR002048 GO:0005509
Trre15g04004 180 ProSitePatterns EF-hand calcium-binding domain. 163 175 IPR018247 -
Trre15g04004 180 ProSiteProfiles EF-hand calcium-binding domain profile. 77 112 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g04004 Trre-Chr15 50423513 50424055 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g04004 6 180 EF-hand Containing Proteins AT3G50770 51.515 1.93e-58 180
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g04004 K13448 - gmx:100500092 227.254
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g04004 15 50423513 50424055 Trre15g04004 15 50423513 50424055 ECH