Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g03977 ATGGGTAGAACGTTAATGAACTATTTGGCTATGAAAACGGATCCCGTTGTGGCTAATTTAATCGATTCCGATTTAAATGAGCTCAAGATTGTAGCTAAAAAACTCTTCAATGATGCAACTATGGTAGGAGGAAAAGGGATTGGCATGTCTTTCCTTAGATGGATTGCTTCCTTTGCTGCAATCTATTTACTCATACTCGATCGCACAAACTGGAGAACCAATATGCTAACTTCATTATTAGTACCTTACATATTCTTCAGTTTTCCCGGGTCCTTGTTTAATTTTTTCAGAGGAGAATTTGGAAAATGGATTGCTTTTGTTGCCGTCGTGCTCAGACTTTTCTTCAATAAACATTTTCCGGACTCATTGGAAATGCCAGGATCAATGATCCTTCTTTTGACAGTAGCACCTGATTTGTTTGCTATAAAGTTTAGGAACAATTGGATTGGAGTAGCAATTGATCTTTTCATTGGTTGTTACTTACTACAAGAACATATTAGAGCCACTGGTGGATTCAGAAATTCTTTCACACAAAGACATGGAATATCTAACACTCTTGGCATCATCTTCCTCATAGTTTATCCTATTTGGGCATTGCTCATCCATTGA 609 0.3727 MGRTLMNYLAMKTDPVVANLIDSDLNELKIVAKKLFNDATMVGGKGIGMSFLRWIASFAAIYLLILDRTNWRTNMLTSLLVPYIFFSFPGSLFNFFRGEFGKWIAFVAVVLRLFFNKHFPDSLEMPGSMILLLTVAPDLFAIKFRNNWIGVAIDLFIGCYLLQEHIRATGGFRNSFTQRHGISNTLGIIFLIVYPIWALLIH 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g03977 202 PANTHER COLD-REGULATED 413 PLASMA MEMBRANE PROTEIN 2 4 200 IPR008892 GO:0016020
Trre15g03977 202 Pfam Cold acclimation protein WCOR413 11 191 IPR008892 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g03977 Trre-Chr15 49938413 49939525 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g03977 - - gmx:100810337 328.176
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g03977 15 49938413 49939525 Trre15g03977 15 49938413 49939525 ECH