Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g03923 ATGGCGCAGTGGTGGCGCTCCGCCGTCAACCACCTCCGATCAACGGAGGTAAACCATAGCTCATTATCCTCATTCCGTCGTAGTCATTACCACACAATCCAAGCAATTCCGAGAGAAAGCACTGGCAGTAAAGTTGCCGCCAGAGACAGAATGCAAGGTCGAATTCCGGCCGTCGTTTTCTTCCAGAACCTTCTCGAAAAAAACCCTGAATCACGATCTTCGTCAAGGAAGCATGTTCTGACCGTTGAGAAGAAGCAGATTAAGGCAGTACTCAATTCGATTGAAGCTCCGTTCTTCTGTTCCACCCGTTTTCCGATTCAGATTCGTGCTGGTTCTGGATCCACTCATTTGCTTGAAAGTGGAACTGTTCTACCTATCAAGATTCATAGGGATGAAGAGAGTGGGAATATTTTGAATTTGGTGTTTGTTTGGGCTGAAGATGGTATGGATTTGAAGGTTGATGTGCCTGTTGTTTTCAAAGGGGAAGATGCTTGTCCTGGTCTAAAGAAAGGTGGATTTTTGAATAAGATCAGAACTAGTCTAAAATATCTTGGTCCCTCTGAGCACATTCCTTCAAAAATTGAGGTGGATATCAGCAATTTAGATATTGAAGATAGGATATTCATGCGTGATATTGAGGTTCATCCATCCTTGAAGCTTCTGAATAAGAATGAAAACATGCCCATATGTAAAATAGTTCCAACAAGTTTGGGAAACCAAGAACCAGTTGGTGCGTGA 738 0.4322 MAQWWRSAVNHLRSTEVNHSSLSSFRRSHYHTIQAIPRESTGSKVAARDRMQGRIPAVVFFQNLLEKNPESRSSSRKHVLTVEKKQIKAVLNSIEAPFFCSTRFPIQIRAGSGSTHLLESGTVLPIKIHRDEESGNILNLVFVWAEDGMDLKVDVPVVFKGEDACPGLKKGGFLNKIRTSLKYLGPSEHIPSKIEVDISNLDIEDRIFMRDIEVHPSLKLLNKNENMPICKIVPTSLGNQEPVGA 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g03923 245 SUPERFAMILY Ribosomal protein L25-like 37 234 IPR011035 GO:0006412
Trre15g03923 245 CDD Ribosomal_L25_TL5_CTC 32 91 IPR029751 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Trre15g03923 245 Gene3D Ribosomal protein L25, beta domain 149 227 IPR037121 -
Trre15g03923 245 PANTHER RIBOSOMAL PROTEIN L25/GLN-TRNA SYNTHETASE, ANTI-CODON-BINDING DOMAIN-CONTAINING PROTEIN 22 235 - -
Trre15g03923 245 FunFam Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain-containing protein 148 235 - -
Trre15g03923 245 Pfam Ribosomal protein TL5, C-terminal domain 151 235 IPR020057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g03923 Trre-Chr15 49157585 49160220 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g03923 K02897 - gmx:100802599 409.838
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g03923 15 49157585 49160220 Trre15g03923 15 49157585 49160220 ECH