Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g03566 ATGGTCACCAAACCTTATTCAAAACCACCTTCACATGCATCTCTAGACACAATACAAGAAATAACTCAAATATATTCATCACTTCCACCTAGACCTTCCATAGAAGAAATAGAAGCTGCTACATCAACTCTTGACACCCTTAACAACTTGGAACAAACAAAACTACAAGACATATCAACACAAAAACCACCACAAGATGTTTCTGATGATCTTTTCTATGTTCTTCAACAACTCAAGAAAACCATGGTCCTGTTTCAAAGTCATCAACAAAGAAAAGAAGCTATTCACCTTCTTCAACTTGATAAGATGTTTCAAACTTTTGGTGATCTTATTCAAAGAGCTTCTGAATTGGTTTCTCCTGATGAGGATACAAATACAAATACAAAGAAAAAGAAACTTCCTACTTTAGAAGCTGTTGAGGAAGAGGAAGAATTACAAAAGAGTGAAGATTTTGAAGATGAAAAAGGTTCCGTAGTGCACAAGCCGTTTTTGTTTACAGGAGATGGAAGCATTGAGAAATTGAGTCTTATGAAAGTGGCCACTGTGATTGAAAATTGTGCTAATAATAAAGACACAACCCTTGAACTTAGAGGAAAATTGGTGGATCAAATGGAATGGTTGCCATTATCAATAGGGAAATTATCTGATGTTACTCAAATAGACCTATCTGAAAACAGAATCATGGCTCTTCCAACAACAATTATAGGTCTTAAGGCTTTAACAAAGCTTGATCTTCATTCAAACCAACTCATAAATCTTCCAAACTCATTTGGTGAATTGATAAACCTTATTGAACTTGACTTACATGCCAATAAATTAAAATCACTTCCTGCTAGTTTCGGAGACTTGACGAATCTCGTTGAACTTGACTTGAGTACAAATGATTTTGTACAATTACCTGATAAAATTGGGAGTTTAATCAGTTTAAAGAGATTAAATGTTGAGACAAATAGGCTTGAGGAACTACCTTTCACAATTGGGAATTGCACTTCACTTAGTGTTTTGAAGCTAGATTTCAATGAACTCAAGGCACTTCCTGAGGCAATTGGGAAACTTGAATGTTTAGAGATTCTCACTTTGCACTACAATAGAATCAAGAAGTTACCTACAACAATTGGTAATTTGATTAATCTGGAGGAACTTGATGTTAGTTTTAACGAACTAGAATTCGTACCGGAGAATCTGTGTTTTGCGGTTAGTTTGAAGAAACTAAACTTGGGAAAGAATTTTGCTGACTTAAGAACATTGCCAACATCAATTGGAAACCTTGAAATGCTTGAGGAGTTGGATATAAGTGATGATCAGATAAAAACTTTGCCCGAGTCTTTTAGGTTTTTGTCTAAGTTGCGCGTTTTTCGGGCTGATGTAACTCCTCTTGAGGTGCCACCAAAAGAAGTTGTCAAGTTGGGTGCTCGGGAAGTTGTGCAGTATATGGCTAATTATGTCACCAATAGGGATGCAAAAGTCTTGTCATTAAAGAAGAAAAAGAAGGGATTTTGTTTTTGGCTTTGTTCCATATGTGGTCCTCAGCAGGAATAA 1539 0.358 MVTKPYSKPPSHASLDTIQEITQIYSSLPPRPSIEEIEAATSTLDTLNNLEQTKLQDISTQKPPQDVSDDLFYVLQQLKKTMVLFQSHQQRKEAIHLLQLDKMFQTFGDLIQRASELVSPDEDTNTNTKKKKLPTLEAVEEEEELQKSEDFEDEKGSVVHKPFLFTGDGSIEKLSLMKVATVIENCANNKDTTLELRGKLVDQMEWLPLSIGKLSDVTQIDLSENRIMALPTTIIGLKALTKLDLHSNQLINLPNSFGELINLIELDLHANKLKSLPASFGDLTNLVELDLSTNDFVQLPDKIGSLISLKRLNVETNRLEELPFTIGNCTSLSVLKLDFNELKALPEAIGKLECLEILTLHYNRIKKLPTTIGNLINLEELDVSFNELEFVPENLCFAVSLKKLNLGKNFADLRTLPTSIGNLEMLEELDISDDQIKTLPESFRFLSKLRVFRADVTPLEVPPKEVVKLGAREVVQYMANYVTNRDAKVLSLKKKKKGFCFWLCSICGPQQE 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g03566 512 PANTHER LEUCINE-RICH REPEAT-CONTAINING 79 369 - -
Trre15g03566 512 SUPERFAMILY L domain-like 185 462 - -
Trre15g03566 512 MobiDBLite consensus disorder prediction 123 141 - -
Trre15g03566 512 FunFam Plant intracellular Ras-group-related LRR protein 4 173 481 - -
Trre15g03566 512 SMART LRR_typ_2 237 259 IPR003591 -
Trre15g03566 512 SMART LRR_typ_2 423 445 IPR003591 -
Trre15g03566 512 SMART LRR_typ_2 260 282 IPR003591 -
Trre15g03566 512 SMART LRR_typ_2 375 398 IPR003591 -
Trre15g03566 512 SMART LRR_typ_2 306 329 IPR003591 -
Trre15g03566 512 SMART LRR_typ_2 214 236 IPR003591 -
Trre15g03566 512 SMART LRR_typ_2 352 374 IPR003591 -
Trre15g03566 512 SMART LRR_typ_2 283 305 IPR003591 -
Trre15g03566 512 SMART LRR_typ_2 330 351 IPR003591 -
Trre15g03566 512 Gene3D Ribonuclease Inhibitor 168 498 IPR032675 -
Trre15g03566 512 ProSiteProfiles Leucine-rich repeat profile. 239 260 IPR001611 GO:0005515
Trre15g03566 512 SMART LRR_bac_2 398 419 - -
Trre15g03566 512 SMART LRR_bac_2 423 442 - -
Trre15g03566 512 SMART LRR_bac_2 329 348 - -
Trre15g03566 512 SMART LRR_bac_2 306 325 - -
Trre15g03566 512 SMART LRR_bac_2 237 256 - -
Trre15g03566 512 SMART LRR_bac_2 352 371 - -
Trre15g03566 512 SMART LRR_bac_2 260 279 - -
Trre15g03566 512 SMART LRR_bac_2 375 394 - -
Trre15g03566 512 MobiDBLite consensus disorder prediction 118 152 - -
Trre15g03566 512 Pfam Leucine rich repeat 255 296 IPR001611 GO:0005515
Trre15g03566 512 Pfam Leucine rich repeat 308 365 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g03566 Trre-Chr15 42953904 42956280 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g03566 286 460 Receptor kinase-like Gene Family AT3G11080 32.787 9.36e-11 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g03566 - - gmx:100798442 723.776
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g03566 15 42953904 42956280 Trre15g03566 15 42953904 42956280 ECH