Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g03484 ATGGCCGAATCGGTGGACCTTCCGACTCGCTTGGCGATCCTTCCTTTCAGGAACAAGGTTCTCTTACCCGGTGCTATCATCAGAATCCGTTGCACTTCCCCTAGCAGTGTGAAGTTGGTGGAACAAGAACTCTGGCAGAAAGAAGAGAAGGGGTTGATTGGCATCCTGCCTGTGCGTGATGCTCATGAAATTAAGTCAGCAGGAACCGATATTCTAGACCAAAGCTCAAAACTTCAGGACAGTTCATCAGATTCTCTCAAGTCTGATACCAAAAAGCAGAATGACATTGTTCATTGGCACAACAGGGGGGTTGCTGCTCGACCATTACATTTATCAAGGGGAGTGGAGAAACCAAGTGGGAGGGTCACATACACAGTTGTTCTTGAAGGTTTGTGCAGATTTAGTGTCCTGGAACTAAGCACAAGAGGAATATACCATACTGCAAGGATATCTTCCCTCGAGATGACTAAAACTGAGATGGAACAAATAGAGCAAGACCCAGATTACTTAATGTTGTCTCGCCAATTCAAAGCAACAGCAATGGAGCTTATTTCTCTTTTGGAGCTGAAACAAAAAACCGGTGGAAGAACCAAAGTCCTTTTGGACAATGTTCCGGTTCACAAGTTGGCTGATATATTTGTTGCAAGTTTTGAGATAAGTTTTGAAGAACAACTATCTATGTTGGATTCAGTTGGCCCTAAATTGAGGCTTTCAAAAGCAACTGAGTTAGTTGATAGACATTTACAGTCAATACGTGTAGCTGAGAAAATTACACAGAAGGTTGAAGGACAATTGTCAAAATCTCAAAAAGAATTTCTTCTGCGGCAGCAGATGAGGGCTATAAAAGAAGAACTTGGTGATAATGAGGATGATGAGGATGACCTGGTTGCCCTTGAAAGGAAGATGCAGAGTGCAGGAATGCCACCAAATGTATGGAAACAGGCACACAGAGAGTTGAGGAGGCTTAAAAAAATGCAGCCTCAGCAACCTGGGTATAACAGTTCGCGGGTTTACCTAGATCTTCTTGCCGATCTGCCCTGGCAGAAGGCCAGCGAAGAGATGGAACTGGACTTAAGAGCTGCACAAAAGCGACTGGACAGTGATCACTATGGTTTAGTGAAAGTCAAGCAAAGAATTATTGAATACCTGGCAGTTCGCAAGCTTAAACCAGATGCAAGGGGTCCAGTGCTGTGTTTTGTTGGGCCACCAGGTGTTGGGAAAACATCATTGGCATCTTCTATTGCTGCTGCTTTGGGAAGAAAGTTTATCCGCATATCCCTTGGTGGAGTCAAGGATGAGGCCGATATTAGAGGACATAGGAGAACATATGTTGGAAGTATGCCTGGACGGCTTATAGATGGATTAAAGAAAGTAGCTGTTTGCAATCCTGTTATGCTGCTTGATGAAGTTGACAAGACGGGTTCTGATGTTCGTGGAGATCCAGCTTCAGCATTGCTAGAGGTCCTTGATCCAGAACAAAATAAAACATTCAATGATCACTATTTGAATGTTCCATTTGATCTGTCCAATGTAATATTCGTGGCTACAGCAAATAGGATGCAGCCTATTCCTCCACCGCTTCTAGATAGGATGGAAGTGATTGAGCTTCCTGGATATACACCTGAGGAAAAGCTCCAAATAGCCATGAAGCATTTGATTCCAAGAGTTTTGCTCCAACATGGGTTAAGTTCTGTGTTTATTGAGATTCCAGAGGCGATGGTTAAACTTATCATTCAAAGATATACTAGGGAAGCTGGTGTGCGGAATTTGGAGAGGAATCTTGCCGCCCTGGCTCGTGCTGCTGCAGTAAGAGTTGTAGAGCAAGAATTTCCATTAAACAAAAGGATGCAAGGAATTTCTGCTCCACTTCTGGAAAATCGACTCGCTGATGGAACTGAAGTTGAAATGGATCTGATACCAATGAGTGTAAATAGCCAGGACATCTCAAACACATTCAGGATTGCCTCTCTGTTGGTTGTTGATGAAACCATGCTTGAAAAAGTTCTCGGGCCTCCAAGATTTGATGATAGTGAAGCGGCAGAACGTGTGGCTTCCCCTGGGGTCTCTGTTGGGCTGGTTTGGACTGCTTTTGGCGGAGAAGTTCAGTTTGTGGAGGCTACAGAAATGGTAGGGAAGGGCGAACTGCATCTCACTGGACAACTTGGTGACGTAATCAAAGAATCAGCTCAGATTGCACTAACATGGGTAAGGGCAAGGGCAACTGATCTTAGGCTGGATGCTGCAAAGGGATTTAATCTTTTGGAGGGCCGTGATGTACATATTCATTTTCCTGCGGGTGCTGTTCCTAAAGATGGGCCCTCGGCAGGTGTAACTTTAGTCACGTCATTGGTATCACTTTTCACTCAGAAAAGCGTGAGATCAGATACAGCTATGACTGGAGAGATGACATTGAGGGGACTAGTTCTACCAGTTGGAGGTGTTAAGGATAAGATATTAGCTGCCCATCGTTATGGTATCAAGAGAGTTATCTTGCCTGAAAGGAACCTGAAAGACTTGGTTGAAGTACCATCATCAGTGCTGGCCAATTTGGAGATACTGCTTGCTAAACGAATGGAAGATGTGTTAGAGCATGCTTTTGACGGAGGGTGCCCATGGAGACAACACTCTAAGTTATAG 2637 0.4429 MAESVDLPTRLAILPFRNKVLLPGAIIRIRCTSPSSVKLVEQELWQKEEKGLIGILPVRDAHEIKSAGTDILDQSSKLQDSSSDSLKSDTKKQNDIVHWHNRGVAARPLHLSRGVEKPSGRVTYTVVLEGLCRFSVLELSTRGIYHTARISSLEMTKTEMEQIEQDPDYLMLSRQFKATAMELISLLELKQKTGGRTKVLLDNVPVHKLADIFVASFEISFEEQLSMLDSVGPKLRLSKATELVDRHLQSIRVAEKITQKVEGQLSKSQKEFLLRQQMRAIKEELGDNEDDEDDLVALERKMQSAGMPPNVWKQAHRELRRLKKMQPQQPGYNSSRVYLDLLADLPWQKASEEMELDLRAAQKRLDSDHYGLVKVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIAAALGRKFIRISLGGVKDEADIRGHRRTYVGSMPGRLIDGLKKVAVCNPVMLLDEVDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSNVIFVATANRMQPIPPPLLDRMEVIELPGYTPEEKLQIAMKHLIPRVLLQHGLSSVFIEIPEAMVKLIIQRYTREAGVRNLERNLAALARAAAVRVVEQEFPLNKRMQGISAPLLENRLADGTEVEMDLIPMSVNSQDISNTFRIASLLVVDETMLEKVLGPPRFDDSEAAERVASPGVSVGLVWTAFGGEVQFVEATEMVGKGELHLTGQLGDVIKESAQIALTWVRARATDLRLDAAKGFNLLEGRDVHIHFPAGAVPKDGPSAGVTLVTSLVSLFTQKSVRSDTAMTGEMTLRGLVLPVGGVKDKILAAHRYGIKRVILPERNLKDLVEVPSSVLANLEILLAKRMEDVLEHAFDGGCPWRQHSKL 878
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g03484 878 Hamap Lon protease homolog 2, peroxisomal [LONP2]. 3 878 IPR027501 GO:0004252|GO:0006515
Trre15g03484 878 Gene3D - 685 870 IPR014721 -
Trre15g03484 878 CDD RecA-like_Lon 358 539 - -
Trre15g03484 878 SUPERFAMILY PUA domain-like 10 245 IPR015947 -
Trre15g03484 878 ProSiteProfiles Lon N-terminal domain profile. 11 246 IPR003111 -
Trre15g03484 878 Pfam ATP-dependent protease La (LON) substrate-binding domain 11 246 IPR003111 -
Trre15g03484 878 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 401 420 - -
Trre15g03484 878 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 768 787 - -
Trre15g03484 878 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 686 702 - -
Trre15g03484 878 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 821 839 - -
Trre15g03484 878 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 798 817 - -
Trre15g03484 878 Gene3D - 156 289 - -
Trre15g03484 878 FunFam Lon protease homolog 2, peroxisomal 164 289 - -
Trre15g03484 878 FunFam Lon protease homolog 2, peroxisomal 680 871 - -
Trre15g03484 878 SUPERFAMILY Ribosomal protein S5 domain 2-like 686 866 IPR020568 -
Trre15g03484 878 NCBIfam endopeptidase La 13 866 IPR004815 GO:0004176|GO:0005524|GO:0006508
Trre15g03484 878 PIRSF Lon_proteas 1 630 IPR004815 GO:0004176|GO:0005524|GO:0006508
Trre15g03484 878 PIRSF Lon_proteas 643 869 IPR004815 GO:0004176|GO:0005524|GO:0006508
Trre15g03484 878 PANTHER ATP DEPENDENT LON PROTEASE FAMILY MEMBER 12 874 IPR027065 GO:0004176|GO:0004252|GO:0005524|GO:0030163
Trre15g03484 878 FunFam Lon protease homolog 2, peroxisomal 358 536 - -
Trre15g03484 878 ProSiteProfiles Lon proteolytic domain profile. 683 868 IPR008269 GO:0004176|GO:0004252|GO:0006508
Trre15g03484 878 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 345 610 IPR027417 -
Trre15g03484 878 SMART AAA_5 393 538 IPR003593 GO:0016887
Trre15g03484 878 Gene3D - 358 536 IPR027417 -
Trre15g03484 878 Gene3D - 1 154 IPR046336 -
Trre15g03484 878 SMART lon_5 10 246 IPR003111 -
Trre15g03484 878 Pfam ATPase family associated with various cellular activities (AAA) 397 534 IPR003959 GO:0005524|GO:0016887
Trre15g03484 878 Gene3D - 297 345 - -
Trre15g03484 878 FunFam Lon protease homolog 2, peroxisomal 2 153 - -
Trre15g03484 878 Pfam Lon protease (S16) C-terminal proteolytic domain 660 866 IPR008269 GO:0004176|GO:0004252|GO:0006508
Trre15g03484 878 Coils Coil 281 301 - -
Trre15g03484 878 FunFam Lon protease homolog 296 345 - -
Trre15g03484 878 ProSitePatterns ATP-dependent serine proteases, lon family, serine active site. 771 779 IPR008268 GO:0004176|GO:0004252|GO:0006508
Trre15g03484 878 Gene3D - 537 674 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g03484 Trre-Chr15 41646709 41658592 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g03484 K01338 - gmx:100789982 1515.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g03484 15 41646709 41658592 Trre15g03484 15 41646709 41658592 ECH