Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g03476 ATGGCTGTTCAAGCTCAATATCCATCTAATGTTCTCCTTCTAAACAACAACAACAGAAATGGACAAGAAGAACATGATCATCATGAGTACTCCTCCTTACAACAACAACAACAACCACCAGGAGGAGGAGAATCATTAGGACTATCACTCCTTGATCATCCTCACCACCACATCCTATGCAACAACAACAACACAAGTACTAATTCTTCTCGCAAGAGAGGAAGACAAACAACAACAGAACACAACAACGTTATCAATCATCATTTCTCATTACAACAACAACAATCTCAACCTTCACAAATTATTCATCTTTCTCAACTCCATAATCAACAACCAAATGTCGTCTCCACTGGCCTTCGTTTATCATTTGATGATCATCATCAGCAACAACAAAGATTACAATTACAACTTCAGCAACACCAACAATCTCAACAACAACAACAAGGTTGTCACTCTTCCACTTTCTTATCTCTGTTATCACAAGGACTCGTTTCTCAAATCAAACAACACCGTGATGAATTAGACCAATTCATTCAATCCCAGGGAGAGAATCTGCGGCGGACATTGGCCGAGAAGAGGCAGAGACAATACAGGGAGCTACTAAACGCGGCGGAGGAAGCGGTGGCGCAACAACTCAGAGAGAAAGAAGCGGAATTCACAAAAGCCACGCGCAAAAACGCAGAGTTAGAAGCGCGTGCGGCCCAATTAACCATGGAAGCCCAATTATGGCAGGCAAAAGCCCGGGCCCAAGAAGCCACTGCAGCCTCTCTTCAGGCCCAGCTACAGCAAACAATAATGTGTCAAACGGGCGAAGAAGCCGGCGGCGGAGGCGGTGTTTCGTGCGGCATGGAAGGACAGGCAGAGGATGCCGAATCGGCTTATATTGATCCGGATAGAGTGGTTGTTGTTACGGAGGCGCGTGGGAAATGTAGAGGGTGTGAGAAGCGCGTGGCATCGGTGGTTGTTTTGCCTTGTCGGCACTTATGCATATGTACAGAATGCGATACGCATTTCAGAGCATGCCCTGTTTGCTTTACTCTCAAGAATTCAACCGTTGAGGTCTTTCTCTCTTAG 1074 0.4572 MAVQAQYPSNVLLLNNNNRNGQEEHDHHEYSSLQQQQQPPGGGESLGLSLLDHPHHHILCNNNNTSTNSSRKRGRQTTTEHNNVINHHFSLQQQQSQPSQIIHLSQLHNQQPNVVSTGLRLSFDDHHQQQQRLQLQLQQHQQSQQQQQGCHSSTFLSLLSQGLVSQIKQHRDELDQFIQSQGENLRRTLAEKRQRQYRELLNAAEEAVAQQLREKEAEFTKATRKNAELEARAAQLTMEAQLWQAKARAQEATAASLQAQLQQTIMCQTGEEAGGGGGVSCGMEGQAEDAESAYIDPDRVVVVTEARGKCRGCEKRVASVVVLPCRHLCICTECDTHFRACPVCFTLKNSTVEVFLS 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g03476 357 Coils Coil 187 246 - -
Trre15g03476 357 PIRSF SBP1_RNase_bind 1 357 IPR017066 -
Trre15g03476 357 MobiDBLite consensus disorder prediction 59 78 - -
Trre15g03476 357 Pfam Zinc finger, C3HC4 type (RING finger) 308 344 - -
Trre15g03476 357 ProSiteProfiles Zinc finger RING-type profile. 310 344 IPR001841 -
Trre15g03476 357 MobiDBLite consensus disorder prediction 1 50 - -
Trre15g03476 357 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 61 354 IPR017066 -
Trre15g03476 357 FunFam probable BOI-related E3 ubiquitin-protein ligase 2 289 356 - -
Trre15g03476 357 MobiDBLite consensus disorder prediction 1 19 - -
Trre15g03476 357 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 289 357 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g03476 Trre-Chr15 41424194 41425556 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g03476 K19042 - gmx:100788924 364.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g03476 15 41424194 41425556 Trre15g03476 15 41424194 41425556 ECH