Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g03472 ATGGAAGGTCTGATCAAGGGCTTGATCGACGTAGCTCTCGGCAACGATCACAACAATCAGGATAACAACAACAATGATGATGATCGTCAATCACGCGACGAACGTTCCAGATCTTCTTGGGCGGAGGTTGTTTCCGGAGATCAAGATGCCTCCGATCACCGTAATCCTCACTCTCAGAATCAGCGGAACGAGGAGTGGCAATCCGAAGGTTCTAGAATTTCCAACAGACCTCACAACTACCAGAAGGAGGAAGCAGAACCATGGCAAGACAATAGTAACCGTCACAGCCCTCGGCCTCATAAGGAACAATATCGTCCTCAGCAGCAGGATTACGAATCTGAATCTTTCAATACTTCCGAAAGACCCAACAAGTCAAATGAAGATAACAATGATGGATGGCAGACTGTGGGCAAACCTTCAAGACAGACTCACAAGGTTCCAAAGGATAACTGGAACAGCTATAAACGTCCTGCTGATGAGCAACAATACTCCAATGAAGTTGAAGTTGGTGCTAGAGTGGAGCCATCACAAGATGAACTTGCTGATCTGTCACGAGCTTGTGAAAAACTTTGGGATCTGGATTTAAACCGTTTGGTACCTGGCAAGGACTATGAAATTGACTGTGGTGAAGGGAAAAAAGTTTACCAAAAGGAAGATATGGCACAAGGGAGCTTGTTTACATGGGTTAGTGATGATGTATTCAGAAAGCCCACTTATGCTCGATTTCTTTCGCTGTTAGATAATTACAACCCACATCAAGGATCTAAGGAAGTTGTGACATCTGAAGAGAAACAAGAGCAAGCTTCGTTCATAGAAGAAATTAGTAGAACAGCACCGATTAAATATCTTCACAAGTTTCTTGCATCCAAAGGAATCACGTCAGGGAGCTCCCAAGATTTCAAAAGATTGTTGACCAGTTTGTGGTTTGATCTTTATAGCCGCTGTGGAACTTCTGGTTCCTCTTCTGCTTTTGAACATGTATTTGTTGGAGAAATCAAACAAAGCAGTGAAGTTTCTGGATTTCATAACTGGCTGCAGTTTTACCTTGAAGAAGTAAAGGGAAATATTGATTATCAAGGCTATATTTTTCCCCGTCGGCGGGGTTCAATTGCTGACTCTGAAACCCAGCTTCTGACTATTCAGTTTGAATGGAACGGTGTTCTGAAATCGGTATCAAGCACTTTGGTTGGAGTGAGCCCTGAATTTGAAATTGCTTTGTATACCCTGTGTTTCTTTGTCGGTCAGGAAGATAACCACATTCAGATTGGCCCATATGCAGTTAATATCAAATGCTATCGTTTAGGCAATCAAATTGGATCCGTTTTCCCAATTGCAGATTCATGA 1344 0.4271 MEGLIKGLIDVALGNDHNNQDNNNNDDDRQSRDERSRSSWAEVVSGDQDASDHRNPHSQNQRNEEWQSEGSRISNRPHNYQKEEAEPWQDNSNRHSPRPHKEQYRPQQQDYESESFNTSERPNKSNEDNNDGWQTVGKPSRQTHKVPKDNWNSYKRPADEQQYSNEVEVGARVEPSQDELADLSRACEKLWDLDLNRLVPGKDYEIDCGEGKKVYQKEDMAQGSLFTWVSDDVFRKPTYARFLSLLDNYNPHQGSKEVVTSEEKQEQASFIEEISRTAPIKYLHKFLASKGITSGSSQDFKRLLTSLWFDLYSRCGTSGSSSAFEHVFVGEIKQSSEVSGFHNWLQFYLEEVKGNIDYQGYIFPRRRGSIADSETQLLTIQFEWNGVLKSVSSTLVGVSPEFEIALYTLCFFVGQEDNHIQIGPYAVNIKCYRLGNQIGSVFPIADS 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g03472 447 MobiDBLite consensus disorder prediction 109 141 - -
Trre15g03472 447 MobiDBLite consensus disorder prediction 1 165 - -
Trre15g03472 447 ProSiteProfiles Eukaryotic uridylate-specific endoribonuclease (EndoU) domain profile. 179 447 IPR018998 GO:0004521
Trre15g03472 447 SUPERFAMILY EndoU-like 181 445 IPR037227 -
Trre15g03472 447 MobiDBLite consensus disorder prediction 21 40 - -
Trre15g03472 447 MobiDBLite consensus disorder prediction 61 75 - -
Trre15g03472 447 PANTHER PLACENTAL PROTEIN 11-RELATED 100 446 IPR039787 GO:0004521
Trre15g03472 447 MobiDBLite consensus disorder prediction 76 108 - -
Trre15g03472 447 CDD XendoU 179 443 IPR018998 GO:0004521
Trre15g03472 447 Pfam Endoribonuclease XendoU 182 443 IPR018998 GO:0004521
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g03472 Trre-Chr15 41323743 41327744 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g03472 K14648 - gmx:100813919 625.935
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g03472 15 41323743 41327744 Trre15g03472 15 41323743 41327744 ECH