LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre15g03471	ATGACTTTAACACTTCGTTCTTCCATTTCTTTCATCATTCAGAAAGAAACCAAATTCCTTAAAACTTTTGATGATGTCTCTTCTGCCACAGTCACCTTTGCAAAAATTAAGCCATCTTTTCGTCTTAAAGCCAAGAGTTCTATGCAAGTAGCACATACCTTAAACTCTGAAGGAACCATAAATGAAAAATGGGAGAAGGTGCATGCTCCATCAATTGTTCATAGTAACCATGATAATTCTAAGAGGGTGCCAGTGTTTGTGATGCTTCCATTGGACACAGTAACAATGGGAGGAAACTTGAATAAGCCGAGAGCGATGAGTGCTAGTTTGATGGCTTTGAAGAGTGCTGGAGTTGAAGGGGTAATGGTTGATGTTTGGTGGGGTTTGGTTGAAAAAGATGGACCTTTGAAGTATAACTGGGAAGCCTATGCTGAGCTTGTGCAGATGGTGCAAATACATGGTTTGAAGCTTCAAGTTGTTATGTCTTTTCATCAGTGTGGAGGAAATGTTGGAGATTCCTGCAGTGTTCCTCTACCTCCATGGGTGGTGGAAGAGATCAGCAAGAACCCTGACATAGTTTACACAGACAGATCAGGGAGGAGAAATCCTGAGTACATCTCATTGGGGTGTGATTCAGTGCCTGTTCTAAGAGGAAGAACTCCAATCCAAGTGTATGCTGACTACATGAGGAGCTTTCGCGACAGATTCAGAGATTACTTAGGCAGTGTCATTTCGGAAATACAAGTAGGAATGGGTCCATGTGGGGAACTGAGATATCCATCATATCCAGAAAGCAATGGAACTTGGAGGTTTCCTGGAATTGGAGAATTCCAATGTTATGACAAGTATATGAAAGCGTCCTTGGCAGCCGCAGCTGAGGCGATTGGAAAGAAGGAATGGGGAGGAGGTGGCCCCCATGATTCCGGCCAGTACAATCAATTTCCTGAGGATACTGGGTTTTTCAGAAAAGATGGAACATGGAACTCTGAATATGGACAGTTCTTTATGGGATGGTACTCCGGTAAATTATTGGAACATGGTGAGAGGATCCTTGTATCAGCCAAAGAAATATTCCAATCATCTGGTGTGAAACTATCTGGTAAAATTGCTGGAATCCACTGGCATTACAGATCAAGGTCGCACGCAGCTGAACTAACTGCTGGCTACTATAATACTAGACATAATGATGGATATCTTCCAATAGCCAAAATGTTTGCAAACCATGATGTTGTCTTCAATTTCACCTGCATGGAAATGAAAGACAGAGAACAACCTAACCATGCTAACTGCTCACCAGAAGGGTTAGTTCACCAAGTAAAGACGGCAACGAGGACAGCTAGAATAGAACTTGCTGGGGAAAATGCACTGGAGAGATATGATGCAGGTGGATATGCTCAAGTTTTGTCAACAAGTATGTCCGACTCCGGCAGTGGATTGGCTGCATTTACATACTTGAGAATGAATAAAAAGTTGTTTGAAGGTGATAACTGGCGACACCTAGTGGATTTTGTAAGAAACATGTCTGAAGGTGGTCGGAGACAAAGACTTCCAGATTCAGATTCACGCGGAAGTGATATTTATGTTGGGCACATCAAGAAAACTAAGGAGCACAAACAAGAGGCTGGGGCTGTTCTTGTGTGA	1641	0.4266	MTLTLRSSISFIIQKETKFLKTFDDVSSATVTFAKIKPSFRLKAKSSMQVAHTLNSEGTINEKWEKVHAPSIVHSNHDNSKRVPVFVMLPLDTVTMGGNLNKPRAMSASLMALKSAGVEGVMVDVWWGLVEKDGPLKYNWEAYAELVQMVQIHGLKLQVVMSFHQCGGNVGDSCSVPLPPWVVEEISKNPDIVYTDRSGRRNPEYISLGCDSVPVLRGRTPIQVYADYMRSFRDRFRDYLGSVISEIQVGMGPCGELRYPSYPESNGTWRFPGIGEFQCYDKYMKASLAAAAEAIGKKEWGGGGPHDSGQYNQFPEDTGFFRKDGTWNSEYGQFFMGWYSGKLLEHGERILVSAKEIFQSSGVKLSGKIAGIHWHYRSRSHAAELTAGYYNTRHNDGYLPIAKMFANHDVVFNFTCMEMKDREQPNHANCSPEGLVHQVKTATRTARIELAGENALERYDAGGYAQVLSTSMSDSGSGLAAFTYLRMNKKLFEGDNWRHLVDFVRNMSEGGRRQRLPDSDSRGSDIYVGHIKKTKEHKQEAGAVLV	546

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre15g03471	546	ProSitePatterns	Beta-amylase active site 1.	164	172	IPR018238	GO:0000272\|GO:0016161
	Trre15g03471	546	PANTHER	BETA-AMYLASE 1, CHLOROPLASTIC	41	516	IPR001554	GO:0000272\|GO:0016161
	Trre15g03471	546	Gene3D	Glycosidases	75	542	-	-
	Trre15g03471	546	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	380	391	IPR001554	GO:0000272\|GO:0016161
	Trre15g03471	546	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	363	379	IPR001554	GO:0000272\|GO:0016161
	Trre15g03471	546	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	398	421	IPR001554	GO:0000272\|GO:0016161
	Trre15g03471	546	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	252	274	IPR001554	GO:0000272\|GO:0016161
	Trre15g03471	546	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	160	181	IPR001554	GO:0000272\|GO:0016161
	Trre15g03471	546	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	117	131	IPR001554	GO:0000272\|GO:0016161
	Trre15g03471	546	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	435	457	IPR001554	GO:0000272\|GO:0016161
	Trre15g03471	546	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	138	156	IPR001554	GO:0000272\|GO:0016161
	Trre15g03471	546	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	327	346	IPR001554	GO:0000272\|GO:0016161
	Trre15g03471	546	Pfam	Glycosyl hydrolase family 14	86	503	IPR001554	GO:0000272\|GO:0016161
	Trre15g03471	546	SUPERFAMILY	(Trans)glycosidases	81	510	IPR017853	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre15g03471	Trre-Chr15	41313673	41316261	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre15g03471	1	544	Glycoside Hydrolase	AT4G17090	72.595	0.0	837

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre15g03471	K01177		-	gmx:100818063	945.266

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Trre15g03471	15	41313673	41316261	Trre15g03471	15	41313673	41316261	ECH