Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g03262 ATGCATAAGACCGGTTCTGCTTCAACGTTAGGTCCAGGCGGCCTAGACTTAACCCAAGCATTCTTCAAACCAATCTCAAACGCAGCTCCACAATCTCCCACCAAACGCCACAACAAAATCTCCGTAATCGGAGCCGGAAACGTCGGAATGGCCATTGCTCAAACCATCCTAACTCAAGACCTCACCGACGAGCTAGTCATCGTCGATAACAAACCCGACAAACTCCGTGGCGAGATGCTCGATCTTCAACACGCTGCTGCTTTCCTCCCTCGCGTTAAGATCAATTCATCTGTTGAATACTCTGTCACTGCTGGATCTGATCTCTGTATTGTCACTGCTGGTGCGAGACAGAATCCAGGTGAATCTAGGCTTAATCTTCTTCAGAGGAACCTTGCTTTGTTTAAGACGATTATACCCCCTCTGGCTCGTTATTCGCCGGAAACTGTTCTTGTTATTGTTTCTAACCCTGTTGATGTTCTTACTTACATCGCTTGGAAGCTTTCTGGGTTTCCGTCGAATCGGATCATCGGGTCGGGTACTAATTTGGACTCCTCTCGTTTTCGTTTTCTTATTGCTGATCACCTTCAGGTCAACGCTCAAGATGTTCAGGCATGCATAGTAGGGGAGCATGGGGATAGTTCAGTGGCATTGTGGTCTAGCATTAGCGTTGGAGGTGTTCCTATACTCAGTTTTTTGGAGAGTCAACAGATTGCATATGAGAAAGAAACACTGGAGAATATACACAAGACAGTGGTAAACAGTGCTTATGAAGTCATCAGTCTGAAAGGCTACACTTCATGGGCCATCGGGTACTCAGTGGCTAGCTTGGCTCGATCCATTATTAGGGACCAAAGGAAGATCCACCCTGTGTCTGTTCTTGCTAAGGGCTTTTATGGCATAGGTGATGTTGAAGTGTTTTTGAGCTTGCCAGCACAGCTTGGAAGAGGAGGTGTTCTTGGTGTAACCAATGTGCACATGAATGAAGAGGAGGAACAAAGGTTAAGGGATTCTGCTAAAACCATCTTGGAGGTTCAGACTCAATTGGGGATTTAA 1053 0.4625 MHKTGSASTLGPGGLDLTQAFFKPISNAAPQSPTKRHNKISVIGAGNVGMAIAQTILTQDLTDELVIVDNKPDKLRGEMLDLQHAAAFLPRVKINSSVEYSVTAGSDLCIVTAGARQNPGESRLNLLQRNLALFKTIIPPLARYSPETVLVIVSNPVDVLTYIAWKLSGFPSNRIIGSGTNLDSSRFRFLIADHLQVNAQDVQACIVGEHGDSSVALWSSISVGGVPILSFLESQQIAYEKETLENIHKTVVNSAYEVISLKGYTSWAIGYSVASLARSIIRDQRKIHPVSVLAKGFYGIGDVEVFLSLPAQLGRGGVLGVTNVHMNEEEEQRLRDSAKTILEVQTQLGI 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g03262 350 Pfam lactate/malate dehydrogenase, NAD binding domain 39 177 IPR001236 GO:0016491
Trre15g03262 350 CDD LDH_1 35 347 - -
Trre15g03262 350 FunFam Malate dehydrogenase 33 179 - -
Trre15g03262 350 PRINTS L-lactate dehydrogenase signature 205 218 IPR001557 GO:0016616|GO:0019752
Trre15g03262 350 PRINTS L-lactate dehydrogenase signature 39 63 IPR001557 GO:0016616|GO:0019752
Trre15g03262 350 PRINTS L-lactate dehydrogenase signature 151 171 IPR001557 GO:0016616|GO:0019752
Trre15g03262 350 PRINTS L-lactate dehydrogenase signature 175 193 IPR001557 GO:0016616|GO:0019752
Trre15g03262 350 PRINTS L-lactate dehydrogenase signature 64 88 IPR001557 GO:0016616|GO:0019752
Trre15g03262 350 Gene3D - 180 348 IPR015955 GO:0003824|GO:0016616
Trre15g03262 350 Coils Coil 327 347 - -
Trre15g03262 350 Pfam lactate/malate dehydrogenase, alpha/beta C-terminal domain 180 343 IPR022383 GO:0016616
Trre15g03262 350 NCBIfam L-lactate dehydrogenase 42 341 IPR011304 GO:0004459|GO:0005737
Trre15g03262 350 PIRSF Lac_mal_DH 34 350 IPR001557 GO:0016616|GO:0019752
Trre15g03262 350 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 23 177 IPR036291 -
Trre15g03262 350 PANTHER L-2-HYDROXYCARBOXYLATE DEHYDROGENASE (NAD(P)(+)) 19 348 - -
Trre15g03262 350 Hamap L-lactate dehydrogenase [ldh]. 37 349 IPR011304 GO:0004459|GO:0005737
Trre15g03262 350 Gene3D - 20 179 - -
Trre15g03262 350 ProSitePatterns L-lactate dehydrogenase active site. 207 213 IPR018177 GO:0004459
Trre15g03262 350 SUPERFAMILY LDH C-terminal domain-like 178 347 IPR015955 GO:0003824|GO:0016616
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g03262 Trre-Chr15 31501437 31504230 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g03262 K00016 - zju:107418882 601.282
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g03262 15 31501437 31504230 Trre15g03262 15 31501437 31504230 ECH
Trre9g00499 9 3638522 3639936 Trre15g03262 15 31501437 31504230 PCT