Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g03225 ATGCGTGTGAAGGAAATGCACCCGTTGTGCTGCATCTCATTGGAGAGTCCAGGGATCGGAGGTCATTCACCGGAGCCAGACGCGGCGGCGCTTTCAAGGGCGAGGAGTTTACCGGCGAGTGGATCTGACCGCATTGGTCGCCGTGGATCAGAGGCAACGGTTGCCGGTGTTCTTTACAAGTGGACTAATTACGGTAAAGGATGGAGATCCCGGTGGTTTCTCCTCCGCAATGGCGTACTTTCTTATGCTAAGATCCGGTGGCCGGAGAATCTTAATCTGTTCTCTTCAATCGACGATGTTCGCTTAATCGGAGATGTAACTGCTAACCGTCTCGCTAGAATGGATAGAGACGCCGGGAACGCTGTTCGCCGGAAGAATCATAAGCCTTCCTCCTCCTCCTCCTCTTCTTCTTCTTCTTCTCCATCAGTGGTTCATCTGAAGATCTCATCGTTTAGAGAGAGCAAATCAGACGACAGAAAATTCTATATATTTACAGCAACAAAGACACTTCATCTGAGAACTGATTCAAGGAAAGATCGTGTGGCATGGATACAAGCTTTGGTTTCAACTCGTAGTTTGTATCCAATAAGTGGTCATCATCTATCCCTTCTACCATATCATATATCTGTATCTACTGATAAGCTTAGGAAACGATTGCTTGAAGAGGGTAGTAGTGAGAATCTTGTCAAGGAGTGTGAGCAAATCATGCTTGCAGAGTTTTCTGAATTACAAGAACAGCTAAAAATTCTTTGTCAAGAAAGATCAAGTTTGTTTGATACGATTCGACAGTTGGAGGCAGCTAACATTGAACCTGAGGGCTCTGCCTTGCATGACAGTGAATACCAATTAACAAAGAATGGATTTTCAAGTCTCGGGCGTGGAAAATATAGTGAATGCAGTACAACGGAATCATCTGACGATATTGAAAAACAAGAGGTAGAAGAAGTGTCAGAAGAAGATGAAATCTCATATTATGATACTAGAGACTATTTTACAGAACCTAGTTTTAGTTGTGGGTCAAAAGGAACTCTGGATCAAGTGAACATGTCCGGGGAAGTTGTTAGACAATGCATTGATATGGAAAACAGTCATGCTGAGACAATGAAATGTGATGATTATGGGTATCCTCAGATATCAAGGCGAAAAAAGCTTCCAGATCCTGTTGAGAAGGAAAAGGGTGTTAGTCTTTGGTCAATGATCAAAGACAATGTGGGCAAAGATCTCACACGTGTATGTCTTCCTGTATTCTTTAATGAGCCAATATCGTCCCTTCAGAAATGTTTTGAGGATTTGGAGTACTCTTATCTTCTGGATAGAGCTTATGAGCATGGAAAAAAGGGAAACAGTCTCCTTCGGGCACTGAACGTTGCTGCCTTTGCTGTTTCTGGATATGCATCATCAGAAGGTCGTCACTGTAAGCCCTTTAATCCCTTGTTAGGGGAAACTTACGAGGCCGATTTTCCTGACAAAGGAGTTCGTTTCTTTTCTGAGAAGGTTAGTCACCATCCAACTGTTGTTGCCTGCCACTGTGAAGGTAGAGGATGGAGGTTCTGGGCAGATAGTAACATCCATTCAAAGTTTTGGGGAAGGTCAATTCAGCTTGACCCAGTTGGAGTTCTGACCCTTGAATTTGATGATGGTGAAATATTTCAGTGGAGCAAGGTTACTACTACAATTTATAATCTTATCCTTGGCAAACTATATTGTGATCATCATGGGAATATGGAAATTCGTGGTAATCGCCAATATTCATGCAGGCTCAAGTTCAAAGAGCAGACGATTCTTGACCGAAATCCTCGCCAGGTAAATGGATTTGTTGAAGATACAATGGGAAAAAAAGCAGCCACATTATTTGGCAAGTGGGATGACAGCATATATTATTTTGATGGTGATGTGAATGTCAAGCATAAAGATTACACGTCGTCTAATGGAACCTTATTGTGGAAAAGGACTAAGCCACCACCGAATTTGACTCGGTACAATTTGACATCATTTGCCATCACACTGAATGAGCTTACACCAGGACTAAAGGAGAAGCTTCCGCCCACGGATTCCAGGCTGAGACCTGATCAGCGGCATTTAGAGAATGGGGAATACGAGAAGGCTAATATGGAGAAACAGAGGTTGGAAAAGAGGCAAAGAATGTCAAGGAAAATGCAAGAAAATGGTTGGGAGCCTAGGTGGTTTCGCAAAGAAGGTGAAAACGGAACGTTTCGATATACTGGTGGGTATTGGGAAGCGAGAGCTGTAGGAACATGGGATGGATGCCCAAATATATTTGGTGAATTTCAAGAAAGCATCACTGATTCTTTTGATGCCTCTTGA 2325 0.4301 MRVKEMHPLCCISLESPGIGGHSPEPDAAALSRARSLPASGSDRIGRRGSEATVAGVLYKWTNYGKGWRSRWFLLRNGVLSYAKIRWPENLNLFSSIDDVRLIGDVTANRLARMDRDAGNAVRRKNHKPSSSSSSSSSSSPSVVHLKISSFRESKSDDRKFYIFTATKTLHLRTDSRKDRVAWIQALVSTRSLYPISGHHLSLLPYHISVSTDKLRKRLLEEGSSENLVKECEQIMLAEFSELQEQLKILCQERSSLFDTIRQLEAANIEPEGSALHDSEYQLTKNGFSSLGRGKYSECSTTESSDDIEKQEVEEVSEEDEISYYDTRDYFTEPSFSCGSKGTLDQVNMSGEVVRQCIDMENSHAETMKCDDYGYPQISRRKKLPDPVEKEKGVSLWSMIKDNVGKDLTRVCLPVFFNEPISSLQKCFEDLEYSYLLDRAYEHGKKGNSLLRALNVAAFAVSGYASSEGRHCKPFNPLLGETYEADFPDKGVRFFSEKVSHHPTVVACHCEGRGWRFWADSNIHSKFWGRSIQLDPVGVLTLEFDDGEIFQWSKVTTTIYNLILGKLYCDHHGNMEIRGNRQYSCRLKFKEQTILDRNPRQVNGFVEDTMGKKAATLFGKWDDSIYYFDGDVNVKHKDYTSSNGTLLWKRTKPPPNLTRYNLTSFAITLNELTPGLKEKLPPTDSRLRPDQRHLENGEYEKANMEKQRLEKRQRMSRKMQENGWEPRWFRKEGENGTFRYTGGYWEARAVGTWDGCPNIFGEFQESITDSFDAS 774
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g03225 774 Pfam Pleckstrin homology domain 56 187 - -
Trre15g03225 774 MobiDBLite consensus disorder prediction 116 141 - -
Trre15g03225 774 Gene3D - 691 749 - -
Trre15g03225 774 Coils Coil 692 721 - -
Trre15g03225 774 ProSiteProfiles PH domain profile. 51 192 IPR001849 -
Trre15g03225 774 SMART PH_update 52 194 IPR001849 -
Trre15g03225 774 FunFam Oxysterol-binding protein-related protein 2A 691 762 - -
Trre15g03225 774 Pfam Oxysterol-binding protein 395 748 IPR000648 GO:0008289
Trre15g03225 774 PANTHER OXYSTEROL-BINDING PROTEIN-RELATED 53 748 IPR000648 GO:0008289
Trre15g03225 774 MobiDBLite consensus disorder prediction 125 141 - -
Trre15g03225 774 Gene3D - 481 653 - -
Trre15g03225 774 SUPERFAMILY PH domain-like 51 189 - -
Trre15g03225 774 Gene3D - 48 193 IPR011993 -
Trre15g03225 774 FunFam oxysterol-binding protein-related protein 1D isoform X1 481 652 - -
Trre15g03225 774 SUPERFAMILY Oxysterol-binding protein-like 390 766 IPR037239 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g03225 Trre-Chr15 30841049 30850097 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g03225 K20456 - gmx:100812205 1311.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g03225 15 30841049 30850097 Trre15g03225 15 30841049 30850097 ECH