Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g03193 ATGAGAAACGATTCTCCTTATACTCCTCTTCTCAATAATGGATCCCATAATAACCGTAAAGAGATTCTTCTCATCGTTTGTGGATTCTTCTTACTAGCTTCTTTGATCGCTTTTAGTGGCTACAGAGCCTCCAACAACGTAGTACCTGTCCCTCATGTTGACGTGTCGTTCTCCGATGAAGTTGAGAAACCAAACACGGTTGTTTCTCGAGGTGTTTCTGCCGGTGTGTCGGAGAAGTCAAACACGTTTCTCTCCGCTGCCGGTAATAAGGTTGGAGGAGAATCTGAATCTTTTCCTTGGAATAATACTATGTTGTCGTGGCAGAGAACATCTTTTCATTTTCAGCCCGTAAAGAATTGGATGAATGATCCTAACGGTCCTATGTACTACAAGGGATGGTACCATTTTTTCTACCAATACAATCCAAATGGCGCAGTTTGGGGCGACATAGTTTGGGGGCACGCTGTATCAAGGGACATGATCCATTGGCTTCACCTTCCGCTAGCAATGGTGGCAGATCAATGGTATGATAGTAACGGTGTTTGGACAGGCTCTGCTACCATCTTACCTGACGGTCAAGTCATCATGTTATATACTGGTTCAACCAATGAAACGGTGCAAGTTCAAAACCTTGCATACCCTGCTGATCTCAATGACCCTCTTCTCGTTGATTGGATCAAATACCCTTCCAATCCGGTTCTCGTCCCTCCACCAGGCATTCTTCCCAAGGACTTTCGCGACCCAACAACTGCTTGGCTCACCTCCGAAGGAAAGTGGCGCATCACCATAGGCTCCAAGCTTAACAAAACCGGCATTGCTTTGGTTTATGATACGGTCGATTTCAAGACCTACGAGCGTAAAGAGAATTTGCTTAATGCTGTTCCTACCACTGGTATGTGGGAGTGTGTGGACTTTTTCCCTGTTTCTAAGAAATCTGAAAATGGTTTGGATACTTCCTTTAATGGGAATGATGTTAAGCATGTGATGAAGGTGAGTTTGGATGATGATAGACATGATTATTATGCATTGGGGACTTATGATGAGAAGAAGGTTAAGTTTATAGCTGATGATCTTAAAAATGATGTTGGTATTGGATTGAGGTATGATTATGGTATATTCTATGCTTCCAAGACATTTTATGATCAGAAAAAGGATAGGAGAGTATTGTGGGGTTGGATTGGAGAATCTGATAGCGAATACGCCGATGTCGCCAAAGGTTGGGCATCAGTTCAGAGCATTCCAAGAATTGTGAAACTTGATAAGAAGACTGGTAGCAACTTACTTCAATGGCCAGTTGCAGAAGTGGAAAGTTTGAGATTAAAAAGTGATGAATTTAAAAATTTGAAGGTCAAGCCAGGAGCCGTAGTGTCACTGGATATTGAAACTGCCACACAGTTGGACATTATAGCTGAGTTTGAGATAGACAAGGAAGCTGTAGAGAAAATAGCTCAATCAAATGTAGAGTATGAGTGCAGCACTAGTGGTGGAGCTTCTAAACGTGGTGCCTTAGGACCTTTTGGTCTTTATGTTTTGGCAGATAGTGGTCTTTCTGAGTACACTCCTGTGTACTTTTATGTTGTTAAAGGAAGCAATGGAAAACTTAAGACTTCTTTCTGCTCTGATCAATCAAGATCATCTCTAGCAAATGATGTTCATAAACAAATCTATGGAAGTATAGTTCCAGTACTTGAAGGAGAAAAATTGTCCTTAAGAATACTTGTGGACCATTCTATAGTTGAAAGCTTTGCTCAAGGTGGAAGGACATGTATAACATCAAGAGTTTATCCAACAAGAGCAATTTATGGAGCTGCTAAGTTGTTCATATTCAACAATGCTATTGAGACCAATGTCACTGCCTCTATCAAAGTTTGGCAGATGAATTCTGCATTTATAAGACCATACCATCCTGACCAAAAGAGATGA 1923 0.4134 MRNDSPYTPLLNNGSHNNRKEILLIVCGFFLLASLIAFSGYRASNNVVPVPHVDVSFSDEVEKPNTVVSRGVSAGVSEKSNTFLSAAGNKVGGESESFPWNNTMLSWQRTSFHFQPVKNWMNDPNGPMYYKGWYHFFYQYNPNGAVWGDIVWGHAVSRDMIHWLHLPLAMVADQWYDSNGVWTGSATILPDGQVIMLYTGSTNETVQVQNLAYPADLNDPLLVDWIKYPSNPVLVPPPGILPKDFRDPTTAWLTSEGKWRITIGSKLNKTGIALVYDTVDFKTYERKENLLNAVPTTGMWECVDFFPVSKKSENGLDTSFNGNDVKHVMKVSLDDDRHDYYALGTYDEKKVKFIADDLKNDVGIGLRYDYGIFYASKTFYDQKKDRRVLWGWIGESDSEYADVAKGWASVQSIPRIVKLDKKTGSNLLQWPVAEVESLRLKSDEFKNLKVKPGAVVSLDIETATQLDIIAEFEIDKEAVEKIAQSNVEYECSTSGGASKRGALGPFGLYVLADSGLSEYTPVYFYVVKGSNGKLKTSFCSDQSRSSLANDVHKQIYGSIVPVLEGEKLSLRILVDHSIVESFAQGGRTCITSRVYPTRAIYGAAKLFIFNNAIETNVTASIKVWQMNSAFIRPYHPDQKR 640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g03193 640 PANTHER BETA-FRUCTOFURANOSIDASE, INSOLUBLE ISOENZYME CWINV1-RELATED 102 629 - -
Trre15g03193 640 FunFam Beta-fructofuranosidase, insoluble isoenzyme CWINV1 117 443 - -
Trre15g03193 640 SUPERFAMILY Arabinanase/levansucrase/invertase 106 432 IPR023296 -
Trre15g03193 640 Pfam Glycosyl hydrolases family 32 N-terminal domain 113 431 IPR013148 -
Trre15g03193 640 Pfam Beta-fructofuranosidase, N-terminal domain 15 105 IPR021792 GO:0004564
Trre15g03193 640 ProSitePatterns Glycosyl hydrolases family 32 active site. 113 126 IPR018053 GO:0004553|GO:0005975
Trre15g03193 640 FunFam Beta-fructofuranosidase, insoluble isoenzyme CWINV1 443 626 - -
Trre15g03193 640 Pfam Glycosyl hydrolases family 32 C terminal 434 625 IPR013189 -
Trre15g03193 640 CDD GH32_Fruct1-like 119 419 - -
Trre15g03193 640 SMART glyco_32 113 586 IPR001362 GO:0004553|GO:0005975
Trre15g03193 640 Gene3D Glycosyl hydrolase domain; family 43 117 442 IPR023296 -
Trre15g03193 640 SUPERFAMILY Concanavalin A-like lectins/glucanases 431 630 IPR013320 -
Trre15g03193 640 Gene3D - 443 626 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g03193 Trre-Chr15 29895544 29900309 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g03193 6 640 Glycoside Hydrolase AT1G12240 64.231 0.0 851
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g03193 K01193 - gmx:100788844 1052.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g03193 15 29895544 29900309 Trre15g03193 15 29895544 29900309 ECH