Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g03114 ATGGATGGATCAACCGGTAACCGAAATAATCCACCTTCCGCCATGTCACCACCGCCTGAGCCATCACCGGAAAGTCTCCGTCACGTGGAGCGTATGATAAATTCCAACCATTATACATCACCTTCTAGAACAATCTACTCCGATAGGTTTATTCCGAGTAGATCTGCGTCCAAATTCGCTCTCTTCGATATCAATACTCCGACGGAGGGACGCGATGATAGTTCTAGCGCTTACACCAGTCTTCTTCGTACAGCTTTGTTCGGACCTGATGTTGCCGGTGTTGTAGCTCCTGTAACGCCTGAGAAGACGAACTCGCCGTCGATGACATTACCTAGCAGGAATATTTTTAGGTATAAGACGGAGACTCGTCAGTCCATGCATTCGCTTTCTCCGTTTATGTCTGATGATGTTGTTCCCGGCGTTAATCATAGTCCGGTTAAGGCTCCGAGGAAGGTTCCTCGATCGCCTTATAAGGTTTTGGATGCACCTGCATTGCAAGATGATTTTTATCTGAATCTGGTGGATTGGTCTTCGCACAATGTGTTGGCTGTTGGTTTGGGTAATTGTGTTTATCTCTGGAATGCTTGTAGCAGCAAGGTAACTAAATTATGCGACTTAGGGGTTGATGACTGTGTTTGTTCTGTTGGCTGGGCTCAACGTGGTACTCATCTTGCTGTTGGAACTAACAATGGTAAAGTTCAGATATGGGATGCAGCACGATGCAAGAAGATAAGATCTATGGAGGGTCATCGGTTACGGGTTGGAGCCTTGGCCTGGAGTTCATCTCTTTTGTCTTCTGGTGGTCGGGATAAGAATATTTATCAACGAGATATACGCACACAAGAGGATTTTGTTAGTAAACTGTCAGGACACAAATCAGAGGTTTGTGGACTGAAGTGGTCATATGATAACCGTGAGTTGGCATCTGGAGGAAATGATAACAGACTGTTTGTTTGGAATCAACACTCGACTCAACCTGTCCTGAAATACTGTGAGCACACTGCAGCTGTTAAGGCTATTGCTTGGTCACCTCATCTTCATGGACTTCTTGCATCTGGAGGAGGAACTGCAGATCGATGTATCCGTTTCTGGAATACAACCACAAACTCACACTTAAGCTGTATGGACACTGGAAGTCAGGTTTGCAATCTTGTCTGGTCGAAAAATGTCAATGAACTAGTAAGCACACATGGCTACTCCCAGAACCAGATAATTGTTTGGAGATACCCCACAATGTCAAAGTTGGCCACTCTTACGGGCCATACATATAGGGTTCTTTATCTTGCCATCTCTCCAGATGGACAGACTATTGTAACTGGAGCTGGAGATGAAACACTTAGGTTCTGGAATGTATTCCCTTCTCCTAAATCGCAGAATACTGAAAGTGAAATCGGAGCATTATCTCTTGGAAGAACTACTATCAGGTGA 1428 0.4489 MDGSTGNRNNPPSAMSPPPEPSPESLRHVERMINSNHYTSPSRTIYSDRFIPSRSASKFALFDINTPTEGRDDSSSAYTSLLRTALFGPDVAGVVAPVTPEKTNSPSMTLPSRNIFRYKTETRQSMHSLSPFMSDDVVPGVNHSPVKAPRKVPRSPYKVLDAPALQDDFYLNLVDWSSHNVLAVGLGNCVYLWNACSSKVTKLCDLGVDDCVCSVGWAQRGTHLAVGTNNGKVQIWDAARCKKIRSMEGHRLRVGALAWSSSLLSSGGRDKNIYQRDIRTQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNSHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTGHTYRVLYLAISPDGQTIVTGAGDETLRFWNVFPSPKSQNTESEIGALSLGRTTIR 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g03114 475 ProSiteProfiles Trp-Asp (WD) repeats profile. 418 451 IPR001680 GO:0005515
Trre15g03114 475 Gene3D - 146 455 IPR015943 GO:0005515
Trre15g03114 475 PANTHER CELL DIVISION CYCLE 20 CDC20 FIZZY -RELATED 31 465 IPR033010 GO:0010997|GO:0097027|GO:1904668
Trre15g03114 475 Pfam WD domain, G-beta repeat 285 320 IPR001680 GO:0005515
Trre15g03114 475 Pfam WD domain, G-beta repeat 325 365 IPR001680 GO:0005515
Trre15g03114 475 Pfam WD domain, G-beta repeat 414 450 IPR001680 GO:0005515
Trre15g03114 475 SMART WD40_4 281 320 IPR001680 GO:0005515
Trre15g03114 475 SMART WD40_4 323 365 IPR001680 GO:0005515
Trre15g03114 475 SMART WD40_4 153 194 IPR001680 GO:0005515
Trre15g03114 475 SMART WD40_4 240 277 IPR001680 GO:0005515
Trre15g03114 475 SMART WD40_4 197 237 IPR001680 GO:0005515
Trre15g03114 475 SMART WD40_4 411 450 IPR001680 GO:0005515
Trre15g03114 475 FunFam FIZZY-related 2 isoform 1 153 453 - -
Trre15g03114 475 ProSiteProfiles Trp-Asp (WD) repeats profile. 288 329 IPR001680 GO:0005515
Trre15g03114 475 Pfam Anaphase-promoting complex subunit 4 WD40 domain 205 261 IPR024977 -
Trre15g03114 475 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 418 451 - -
Trre15g03114 475 SUPERFAMILY WD40 repeat-like 157 457 IPR036322 GO:0005515
Trre15g03114 475 ProSitePatterns Trp-Asp (WD) repeats signature. 437 451 IPR019775 -
Trre15g03114 475 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 288 320 - -
Trre15g03114 475 MobiDBLite consensus disorder prediction 1 25 - -
Trre15g03114 475 ProSiteProfiles Trp-Asp (WD) repeats profile. 212 246 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g03114 Trre-Chr15 28355580 28360687 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g03114 224 453 Miscellaneous Gene Families AT5G08390 21.459 1.79e-09 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g03114 K03364 - gmx:100780928 870.152
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g03114 15 28355580 28360687 Trre15g03114 15 28355580 28360687 ECH