Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g03058 ATGAACTCTCGAGAAGTTACTCTAGTTGCCACCGCAACTGCGTTTGGTGCTTTGGCCTCCGCAATCGCTCTCCGTTTCTTCTACCGCTCCCAAACTAACCCATCTAAATCTAATACCTCGCAAAACGGCACCGTTTCTTCTTCTGGGGACCCTTTTGACCCCTCCAAGCGCAAAGGATACTTGTCGTGGGATGATTATTTCATGGCAATTGCGTTTTTGTCTGCTGAAAGATCCAAAGACCCTAACAGGCAGGTGGGTGCTTGCTTAGTAAGTCAAGATGGTATAATTCTAGGCATTGGTTATAATGGATTTCCCAGAGGTTGTTCTGATGACAAGCTACCATGGGCCAAGAAATCTAGGACTGGGAATCCTTTGGAGACTAAGTATCCTTATGTTTGTCATGCAGAAGTAAATGCAATTCTTAACACAAATCATGCCTCTGCTGCTGGACAACGGCTGTATGTGACCATGTTTCCTTGCAATGAGTGTGCCAAGATCATAATCCAGTCTGGGGTTTCCGAAATCATTTATTTTGTGGAGAAGAGATTAGAAAATTCAGATGTTGCATATGCTGCCTCTCACAAGCTACTTTCATTGGCTGGTGTGAAGGTCAGGAAACACCAACCAGTGAAGAGTGAAATTCATCTGAAGTATGAGGAGCACTAG 666 0.4444 MNSREVTLVATATAFGALASAIALRFFYRSQTNPSKSNTSQNGTVSSSGDPFDPSKRKGYLSWDDYFMAIAFLSAERSKDPNRQVGACLVSQDGIILGIGYNGFPRGCSDDKLPWAKKSRTGNPLETKYPYVCHAEVNAILNTNHASAAGQRLYVTMFPCNECAKIIIQSGVSEIIYFVEKRLENSDVAYAASHKLLSLAGVKVRKHQPVKSEIHLKYEEH 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g03058 221 CDD deoxycytidylate_deaminase 64 177 IPR035105 -
Trre15g03058 221 ProSiteProfiles Cytidine and deoxycytidylate deaminases domain profile. 62 204 IPR002125 -
Trre15g03058 221 MobiDBLite consensus disorder prediction 33 52 - -
Trre15g03058 221 Gene3D Cytidine Deaminase, domain 2 54 221 - -
Trre15g03058 221 MobiDBLite consensus disorder prediction 33 51 - -
Trre15g03058 221 ProSitePatterns Cytidine and deoxycytidylate deaminases zinc-binding region signature. 134 167 IPR016192 GO:0008270|GO:0016787
Trre15g03058 221 PANTHER DEOXYCYTIDYLATE DEAMINASE-RELATED 45 221 IPR015517 -
Trre15g03058 221 SUPERFAMILY Cytidine deaminase-like 64 208 IPR016193 GO:0003824
Trre15g03058 221 Pfam Cytidine and deoxycytidylate deaminase zinc-binding region 62 178 IPR002125 -
Trre15g03058 221 FunFam Deoxycytidylate deaminase 53 221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g03058 Trre-Chr15 27678342 27681145 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g03058 K01493 - gmx:100792003 388.267
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g03058 15 27678342 27681145 Trre15g03058 15 27678342 27681145 ECH