Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g03049 ATGGCAATGACAATGGCAACCATGCAAGAGATGCCAAGAAGCCCAGAAGCAAAACTTGGATTACGAGTTAAAGATCTATGGGATACTCAAGAGGCACAATTAAGTCCTGATGAGAAACTTAATGCTTGTTTTGAAAGTATCCCTGTTTCTGCTTTTCCTTTACCTCTTGCAACTCAAGATATTGAAATAAAATCAGATGCTACCTTAGCTGAAGCTGTAAAAATACTGGCACATCACAATATTCTGAGTGCACCTGTGGTGAATGTTGATGCACCTGAAGATGCTAGTTGGATTGATAGATACATCGGAATTGTTGAGTTTGCTGGAATTGTTGTATGGATTTTGCATCAGTCTGAACCTCCATCTCCTAGGACTCCATCCACTCCTAGGAGTCCATCCAGTGCAAGTGCTATTGCAGCCGCGGCAAACGGAAATACTTTCGCTCTTGAACTTGAAGCCTTAGGCCTCGGATCTGCCGCAACAACTAAAGGAGACTTTTTCGAGGACCTTACTTCTTCAGAACTTTATAAGAACACTAAGGTCGGAGATATTTCAGGGACATTCCGATGGGCTCCGTTTCTTGCTTTAGAGAGATCAAACTCATTTCTAACCATGCTCTTGTTGCTTTCTAAGTACAAGATGAAGAGTGTTCCTGTTGTAGACTTAGGTGCTGGTAGAATTGATAACATTATCACACAGCCTGCCGTGATTCATATGTTGGCAGAATGCGTCGGACTTCAGTGGTTTGAAAGCTGGGGAACCAAGGAACTATCTGATGTTGGTCTTCCCCTTGTGACACCACAACAGATCATCAAGGTTTATGAGGATGAACCTGTCCTTCAAGCATTTAAAGAAATGAGGAGAAAGAGGGTTGGAGCGTTGCCTGTAATCGAAAGAGGTGGCACCAAACCAGTTGGTAATATAAGCTTGCGAGATGTTCAATTCTTGCTAACTGCCCCAGAAATCTATCATGATTATAGAGCTGTTACAGTGAAGGATTTCCTGAGTGCAGTTAGAAGCTACATAGATAAGAATAAAAACATATTCACAATGTCAGGTGAATTTGTTACATGCAAAAAAGACTGTAAAGTCAAAGACTTGATTCAGTTGCTAGACAAAGAGAAGCTTCACAGGGTCTATGTTGTGGACGACGAAGGGAATCTTGAAGGACTAATCACTCTAAGAGATATCATCTCAAGGCTAGTACATGAACCACGCGGCTACTTTGGTGATTTCTTCGACGGTGTTCTCCCTCTACCTGCTAACAGCAGGGTTTAA 1278 0.421 MAMTMATMQEMPRSPEAKLGLRVKDLWDTQEAQLSPDEKLNACFESIPVSAFPLPLATQDIEIKSDATLAEAVKILAHHNILSAPVVNVDAPEDASWIDRYIGIVEFAGIVVWILHQSEPPSPRTPSTPRSPSSASAIAAAANGNTFALELEALGLGSAATTKGDFFEDLTSSELYKNTKVGDISGTFRWAPFLALERSNSFLTMLLLLSKYKMKSVPVVDLGAGRIDNIITQPAVIHMLAECVGLQWFESWGTKELSDVGLPLVTPQQIIKVYEDEPVLQAFKEMRRKRVGALPVIERGGTKPVGNISLRDVQFLLTAPEIYHDYRAVTVKDFLSAVRSYIDKNKNIFTMSGEFVTCKKDCKVKDLIQLLDKEKLHRVYVVDDEGNLEGLITLRDIISRLVHEPRGYFGDFFDGVLPLPANSRV 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g03049 425 Gene3D - 254 404 IPR046342 -
Trre15g03049 425 ProSiteProfiles CBS domain profile. 265 326 IPR000644 -
Trre15g03049 425 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 41 401 - -
Trre15g03049 425 Pfam CBS domain 351 402 IPR000644 -
Trre15g03049 425 Pfam CBS domain 269 313 IPR000644 -
Trre15g03049 425 SUPERFAMILY CBS-domain pair 266 411 IPR046342 -
Trre15g03049 425 ProSiteProfiles CBS domain profile. 56 122 IPR000644 -
Trre15g03049 425 SMART cbs_1 354 402 IPR000644 -
Trre15g03049 425 SMART cbs_1 59 115 IPR000644 -
Trre15g03049 425 SMART cbs_1 192 241 IPR000644 -
Trre15g03049 425 SMART cbs_1 269 318 IPR000644 -
Trre15g03049 425 CDD CBS_pair_SF 268 398 - -
Trre15g03049 425 Gene3D - 39 247 IPR046342 -
Trre15g03049 425 ProSiteProfiles CBS domain profile. 351 409 IPR000644 -
Trre15g03049 425 SUPERFAMILY CBS-domain pair 33 241 IPR046342 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g03049 Trre-Chr15 27551012 27553570 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g03049 - - gmx:100818156 658.677
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g03049 15 27551012 27553570 Trre15g03049 15 27551012 27553570 ECH