Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g03045 ATGGCGGATCCCATCGCAGCGCATCACAGATCCGCCACCAACCTCTTCTCCGATCCACTCGACTCCCACCCGCTATGGTTCAAACCCGCATCGTTCCTCTCCCCTGAATTCGATTCGGAATCCTATATTTCCGAACTCCGAACCTTCGTCCCCTTCGATACTCTCCGTTCAGAGCTTAACAACTATCTCTCATCCCTAAATCACGAACTCATTGATCTAATCAATCGTGATTACGCTGATTTCGTTAATCTTAGCACTAAACTTGTCGATGTTGATGCTGCTGTAGTGCGGATGCGAGCACCGCTGGTTGAGCTACGGGAGAAGATCGAACAGTTTAGAGGATCTGTTGATGTTTCGCTTGTTGCTATAAAGAATGGTTTGAAGCAAAGATCTGAAGCTGCTTCCGCGAGAGAGACTTTGGAGCTTCTCCTTGATACGTTTCATGTGGTTTCAAAGGTTGAGAAACTAATAAAGGAGCTGCCCAGTGTACCCTCAGACTGGTCAAATGGAGATGTGAATTTGTCGGAGAAAAATTCATTGAGCAATGGGGTTTCTGTGCAGCCTGTTGAGAATGGGACAAGTGTTAGAGAGACACAAAGCATGCTGCTGGAAAGAATTGCCAGTGAGATGAACCGGCTAAAGTTCTATGTTACACATGCAAAGGACCTGCCTTTTATTGAGAATATGGAGAAGAGGATTCAAAATGCAAGCCTATTAGTAGATGCAAGCTTGGGACATTGCTTTGTTGATGGTCTAGAGCACCGGGATGCAACTGCAATTTACAATTGCTTACGTGCATATGCTGCCATTGATAACACCAAGAATGCAGAAGAAACTTTTCGAGTTACAGTTGTGGCTCCATTGATACAGAAGATTATCCCACATGGGCCATCAGCTGTGGCTGCTGGATCATCTGGGGATGGGCTTGAAAATGATTATCAATTGATTAAGGAGTGCATTTATAAAGACTGCAAATTTTTATTGGATATTTCTTCAGCCGAAAATTCAGGTTTGCACGTCTTTGACTTCTTGGCCAATTCAATCCTTAGAGAGGTTCTCTTTGCTATTCAGAAGGGAAAACCAGGTGCATTTTCTCCTGGAAGACCAATAGAGTTCTTGAAAAATTACAAATCAAGCTTGGAGTTCTTGGCTTATCTAGAAGGCTATTGTCCGTCCAGGTCTGCTGTTGCTAAATTTCGATCCGAAGCAGTCTATACTGAGTTCATGAAGCAATGGAATCTTGGAGTATATTTTTCTTTGAGGTTTCAGGAAATAGCAGGGTCTTTAGATTCTGTGCTGACAACATCCAGTCTTGTCCCCGTTCAAAGTTTAGGCCCCGGCGATGCAAATTATCAAGACTTAACACTAAAACAAAGTGTAACACTGTTGGAGAGTTTGAAATTGTGCTGGAGAGAAGATGTTCTTGTCCTCTCTTGTTCTGACAAGTTCCTTCGCCTATCCTTGCAGCTTCTTTCTAGATACTCAAATTGGCTGTCATCTGGACTGACTGCACGCAAGAATCATAATACAAGCACCGTCACTGGGCGCGAATGGGCTATTTCAGCTGTCATAGATGACTTTATCTTTGTTATTCATGATATAAGATGCTTGGAGGAGCATATTCGTGGTGATTACTTACAACATGTGGTTCAGGCACTATCTTCATGCTCCCCCGATGTTCTTGAATCAGTAAGGCAGAGTATTTTACAAAGTAGTCAATCCTTGAAATCTTTAGAACCTTTGGTCATCAAAGCCGTGGTGGAGTCACTGGTGGAAAAATCAGTCGAGGACTTGAGACAGATGAAGGGGATATCAGCAACATACAGGATGTCAAATAAGCCTGCTGTTAGGCATTCGCCATATGTTGCGGGAGTATTACGTCCCCTAAAGACTTTTTTGGATGGGGAAAGAACCTCTAGATATTTGGCAAGTGAAACCAAGAAAGAAATACTCCTTTCTGCTGCAACTGAGATTACTGACCGTTATTATGAATTAGCTTCCGACCTTGTTAGTGTGGCAAGAAAGACAGAATCTTCACTTCAGAAAATTAGGCAGAGTGCTCAGAGACGAGCTGGGGCAAGTTCAGACATTTCCGATAATAATGTTTCTGACACTGGCAGAATGTGTATGCAGTTGTTCCTTGATATTCAGGAGTATGCGCGTAACCTATCTACCCTAGGGGTTGAAGCAGTTAATATTGCATCCTATCGTTCATTATGGCAGTGTGTGGCTCCAGCAGATAAGCAGAACACAATTAAATTATAA 2265 0.43 MADPIAAHHRSATNLFSDPLDSHPLWFKPASFLSPEFDSESYISELRTFVPFDTLRSELNNYLSSLNHELIDLINRDYADFVNLSTKLVDVDAAVVRMRAPLVELREKIEQFRGSVDVSLVAIKNGLKQRSEAASARETLELLLDTFHVVSKVEKLIKELPSVPSDWSNGDVNLSEKNSLSNGVSVQPVENGTSVRETQSMLLERIASEMNRLKFYVTHAKDLPFIENMEKRIQNASLLVDASLGHCFVDGLEHRDATAIYNCLRAYAAIDNTKNAEETFRVTVVAPLIQKIIPHGPSAVAAGSSGDGLENDYQLIKECIYKDCKFLLDISSAENSGLHVFDFLANSILREVLFAIQKGKPGAFSPGRPIEFLKNYKSSLEFLAYLEGYCPSRSAVAKFRSEAVYTEFMKQWNLGVYFSLRFQEIAGSLDSVLTTSSLVPVQSLGPGDANYQDLTLKQSVTLLESLKLCWREDVLVLSCSDKFLRLSLQLLSRYSNWLSSGLTARKNHNTSTVTGREWAISAVIDDFIFVIHDIRCLEEHIRGDYLQHVVQALSSCSPDVLESVRQSILQSSQSLKSLEPLVIKAVVESLVEKSVEDLRQMKGISATYRMSNKPAVRHSPYVAGVLRPLKTFLDGERTSRYLASETKKEILLSAATEITDRYYELASDLVSVARKTESSLQKIRQSAQRRAGASSDISDNNVSDTGRMCMQLFLDIQEYARNLSTLGVEAVNIASYRSLWQCVAPADKQNTIKL 754
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g03045 754 Pfam COG complex component, COG2, C-terminal 589 716 IPR024603 -
Trre15g03045 754 Pfam COG (conserved oligomeric Golgi) complex component, COG2 25 156 IPR024602 -
Trre15g03045 754 PANTHER CONSERVED OLIGOMERIC GOLGI COMPLEX COMPONENT 2 12 751 IPR009316 GO:0007030|GO:0015031|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g03045 Trre-Chr15 27474914 27486004 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g03045 K20289 - gmx:100817096 1248.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g03045 15 27474914 27486004 Trre15g03045 15 27474914 27486004 ECH