Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g03012 ATGGAAGCCATGGCTGTGTTTACCGGAAGCAATATCTTTGCAACATCATCCTCTCTTCTAAGCACCACCAACTCAAACGCAACAAGAAGAACAAGAATAACCTCTCAATTACGCACCAGTGCCACGCACTTATCTGCATTTCCTTCAAAATCCCATCTTTTTTCATCTTCTTCTACTTCTTCCTATGCCAAAACCATCCGCACCAGATGCAGCAACGAATCCGGCATCTTCCTTCCCCGTTTAATTGCTTCTCTTGAACAAGTTGACAAAACTTACATTATGGTGAAGCCCGATGGCGTGCAACGTGGTCTTGTGGGTGAAATTATTTCTAGATTTGAGAAAAAGGGGTTTAAGTTAATTGGCTTGAAGCTCTTCCAATGTTCAAAAGAATTAGCCGAGGAGCATTACAAGGACCTAAAACAAAAGTCTTTCTTCCCTGCGATGATTGAATACATTACTTCAGGCCCCGTTGTGTCCATGGCTTGGGAGGGTGTTGGAGTAGTGGCATCAGCACGTAAGCTCATAGGGGCTACAGATCCTCTTCTAGCTGAACCAGGCACAATAAGAGGAGACCTTGCTGTCCAAAGAGGAAGGAATGTTATTCATGGCAGCGACAGCCCTGAAAATGGCGAGCGTGAAATAGCCCTATGGTTCAAGGAAGGCGAATTATGCGAATGGACTCCTGTCCAACAACCATGGCTAACAGAGTAA 711 0.4487 MEAMAVFTGSNIFATSSSLLSTTNSNATRRTRITSQLRTSATHLSAFPSKSHLFSSSSTSSYAKTIRTRCSNESGIFLPRLIASLEQVDKTYIMVKPDGVQRGLVGEIISRFEKKGFKLIGLKLFQCSKELAEEHYKDLKQKSFFPAMIEYITSGPVVSMAWEGVGVVASARKLIGATDPLLAEPGTIRGDLAVQRGRNVIHGSDSPENGEREIALWFKEGELCEWTPVQQPWLTE 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g03012 236 SUPERFAMILY Nucleoside diphosphate kinase, NDK 88 235 IPR036850 -
Trre15g03012 236 CDD NDPk_I 90 218 - -
Trre15g03012 236 PANTHER NUCLEOSIDE DIPHOSPHATE KINASE 83 235 - -
Trre15g03012 236 Gene3D - 84 236 IPR036850 -
Trre15g03012 236 Hamap Nucleoside diphosphate kinase [ndk]. 88 223 IPR001564 GO:0004550|GO:0006183|GO:0006228|GO:0006241
Trre15g03012 236 SMART ndk_5 88 225 IPR034907 -
Trre15g03012 236 ProSitePatterns Nucleoside diphosphate kinases active site. 199 207 IPR023005 -
Trre15g03012 236 PRINTS Nucleoside diphosphate kinase signature 135 154 IPR001564 GO:0004550|GO:0006183|GO:0006228|GO:0006241
Trre15g03012 236 PRINTS Nucleoside diphosphate kinase signature 176 192 IPR001564 GO:0004550|GO:0006183|GO:0006228|GO:0006241
Trre15g03012 236 PRINTS Nucleoside diphosphate kinase signature 91 113 IPR001564 GO:0004550|GO:0006183|GO:0006228|GO:0006241
Trre15g03012 236 PRINTS Nucleoside diphosphate kinase signature 155 172 IPR001564 GO:0004550|GO:0006183|GO:0006228|GO:0006241
Trre15g03012 236 PRINTS Nucleoside diphosphate kinase signature 199 218 IPR001564 GO:0004550|GO:0006183|GO:0006228|GO:0006241
Trre15g03012 236 FunFam Nucleoside diphosphate kinase 85 236 - -
Trre15g03012 236 Pfam Nucleoside diphosphate kinase 90 222 IPR034907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g03012 Trre-Chr15 27141620 27144892 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g03012 K00940 - gmx:100500478 310.457
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g03012 15 27141620 27144892 Trre15g03012 15 27141620 27144892 ECH