Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g03008 ATGTTGCCTCCTCCTATCGTCGTCGATATTAACGACATTAAACAAAAACTCTCCGTTCACTTTCGCCCTTTCCAACGTTCCTTTCAGTTCTGGGTTCGTGCCATTGATATTTACACCGGATACAAGGTGTTTCAATTGCGAGTCAATTTCGTGAAAGATGTCCAGAAGCAAGAAGCAATGTGGGAAAGGCAGCACGAGATTGCTGCTGATAAGATTTTCTCTATGTGCTCTGACCTTGGTGGTTTCTTTCTCAAGATTGCACAAATTATAGGGAAGCCGGATTTGGCGCCGGCTGCGTGGGTGAAAAGGCTTGTTACGTTATGTGATAAGGCACCGGCGACTTCTTTTCATACTGTAAAACTTGTGTTAGAGAATGAGCTTGGACTGTCTATTGATGATGTGTTTGACAGGTTTGATGTTGAGCCTCTTGGTTCTGCTTCAATTGCTCAGGTTCATAGAGCAAGACTGAAAGGTGACAAAGGTGATGTTGTTGTCAAGGTTCAGCATCCTGGAGTTCAGGATCTGATGATGACAGATATCCGTAACTTGCAAGCTTTTGCTTTGTACATGCAAAAAACAGATATCAAATTTGATCTATATTCGGTGACAAAGGAAATGGAAAAACAGATTGGGTATGAATTTGACTTCATGAGGGAGGCCAGTGCAATGGAAAGGATTAGAAAGTTCTTGTATAAAATAAACAAAAAGACTCCTGTTTTGGTGCCAAGAGTAATACGAGATATGGTTACTAGAAGGGTCTTTGTTATGGAATATATTGACGGGGTTCCAATAATGAACCTTGGCGATGAAATAGCAAAGAGAGGCATAAATCCTCATGGTAAGGTTGCAGTTGCCGCAAAGCAGAAAATTCTTCAAAGCTTGACTCTAGCATATGGTCAAATGATTTTGAAAAGTGGGTTCTTCCATGCAGATCCTCATCCAGGAAATATTCTGATTTGTAAAGGATCAGAGGTTGCCCTTCTAGACTATGGACAGGTGAAAGATCTCCCAGAGGAATTGAGGCTTGGTTATGCTAATCTTGTTCTTGCAATTGCTGATGCTGATCCAGTAAGAGCTTCAGAAAGCTATAGGGCGCTTGGTATAGATACGTTAAGCAAATGTGAAAATGAGCAACAAGAAATGCTTAAACTGGCACAGACAATGTTTGATACAAAGTTACCTCCCGGTGTGAAAATGCTGCAACCTTTTTCAGAGGAATCTTCAATTAAAAAAATAGCTGTTCAGGCTTTCCCAGAAGAACTATTTTCTATACTTCGGACAGTGCACCTACCGAGGGGACTTAGCGTTGGACTTGGACTCAATTATTCTTGTGCAGAACAGTGGAGACCCATTGCTGAAGAAGCTTTGTCTCAAGCTGGCAGATTTAAAGGGAAAGATGTTAAGCATGGAGGTATAATACGTGGTATAGTAAAAACATTATTTTGGAGAAACTAA 1455 0.4089 MLPPPIVVDINDIKQKLSVHFRPFQRSFQFWVRAIDIYTGYKVFQLRVNFVKDVQKQEAMWERQHEIAADKIFSMCSDLGGFFLKIAQIIGKPDLAPAAWVKRLVTLCDKAPATSFHTVKLVLENELGLSIDDVFDRFDVEPLGSASIAQVHRARLKGDKGDVVVKVQHPGVQDLMMTDIRNLQAFALYMQKTDIKFDLYSVTKEMEKQIGYEFDFMREASAMERIRKFLYKINKKTPVLVPRVIRDMVTRRVFVMEYIDGVPIMNLGDEIAKRGINPHGKVAVAAKQKILQSLTLAYGQMILKSGFFHADPHPGNILICKGSEVALLDYGQVKDLPEELRLGYANLVLAIADADPVRASESYRALGIDTLSKCENEQQEMLKLAQTMFDTKLPPGVKMLQPFSEESSIKKIAVQAFPEELFSILRTVHLPRGLSVGLGLNYSCAEQWRPIAEEALSQAGRFKGKDVKHGGIIRGIVKTLFWRN 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g03008 484 CDD ABC1_ADCK3-like 107 362 - -
Trre15g03008 484 Pfam ABC1 atypical kinase-like domain 107 358 IPR004147 -
Trre15g03008 484 PANTHER ABC1 FAMILY PROTEIN 26 458 - -
Trre15g03008 484 Gene3D Transferase(Phosphotransferase) domain 1 133 346 - -
Trre15g03008 484 SUPERFAMILY Protein kinase-like (PK-like) 111 335 IPR011009 -
Trre15g03008 484 ProSiteProfiles Protein kinase domain profile. 137 484 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g03008 Trre-Chr15 27126420 27133453 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g03008 K08869 - gmx:100813009 817.379
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g03008 15 27126420 27133453 Trre15g03008 15 27126420 27133453 ECH