Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g03007 ATGGCATCAGAAGGAGAAGAATCTCAGCAGCCACAACTCATTCTCGCCGACAAGCTCTTCCTCCTCAAACAATCCGATGTTCAAGACATCGACAAAGTTCGATTTAGAGAAGATGTCTTCAATTTCGTTAAGGAACATGATATGGTTCCTTTATACGAAACCCTAGTTGCCGATTCCGTTTTGGATTTGGATCGTGCCCTTTTGGACTCTATGCGTGCTAAAATCGACGATGAACTTAAGAAGCTTGATGAAAAGATTGCTGACGCCGAAGAAAACTTAGGCGAGAGTGAAGTCCGTGAGGCTCACTTGGCAAAATCCTTATTTTTCATCCGGATTGGGGACAAGGAGAAAGCCTTGGAACATCTCAAGGTAACAGAAACCAAGACTGTTGCAGTGGGGCAGAAGATGGACCTGGTGTTCTATACATTGCAGCTTGGTTTCTTTGACATGAATTTTGATCTCATTTCCAAAAGCATTGACAAAGCAAAAAGCTTGTTTGAAGAAGGTGGTGATTGGGAGAGGAAGAACCGTCTGAAAGTGTATGAAGGCCTCTACTGCATGTCCACTAGAAATTTCGAGAAGGCTGCCTCATTGTTTTTGGATTCTATTTCAACCTTCACAACCTATGAACTCTTTCCGTATGATACCTTTATATTTTACACCGTTTTGACAAGCATCATAACATTGGATAGAGTTTCCTTAAAGCAAAAGGTAGTGGATGCTCCTGAGATCTTGACAGTGATTGGCAAAATCCCACATCTTTCAGAGTTTTTGAACTCCTTATATGATTGCCAATACAAGTCTTTCTTCTCAGCATTTGCTGGCCTGACGGAGCAAATTAAGTTAGATCGCTATCTGCATTCTCACTTCCGGTACTACATGAGAGAGATTAGAACTGTTATCTATTCTCAGTTTTTGGAATCTTACAAGAGTGTGACAATCGAAGCCATGGCAAAAGCATTTGGAGTATCAGTGGATTTTATTGATGTGGAGCTATCACGCTTTATTGCAGCTGGGAAACTTCACTGTAAGATCGATAAAGTTGCTGGCGTTCTTGAAACAAACCGCCCAGATGCCAAGAATGCACTATACCAAGCAACAATTAAGCAAGGGGATTTCTTATTGAACAGGATCCAGAAATTGTCGCGTGTGATTGATCTCTAG 1164 0.4149 MASEGEESQQPQLILADKLFLLKQSDVQDIDKVRFREDVFNFVKEHDMVPLYETLVADSVLDLDRALLDSMRAKIDDELKKLDEKIADAEENLGESEVREAHLAKSLFFIRIGDKEKALEHLKVTETKTVAVGQKMDLVFYTLQLGFFDMNFDLISKSIDKAKSLFEEGGDWERKNRLKVYEGLYCMSTRNFEKAASLFLDSISTFTTYELFPYDTFIFYTVLTSIITLDRVSLKQKVVDAPEILTVIGKIPHLSEFLNSLYDCQYKSFFSAFAGLTEQIKLDRYLHSHFRYYMREIRTVIYSQFLESYKSVTIEAMAKAFGVSVDFIDVELSRFIAAGKLHCKIDKVAGVLETNRPDAKNALYQATIKQGDFLLNRIQKLSRVIDL 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g03007 387 PANTHER 26S PROTESOME SUBUNIT 6 9 387 IPR019585 -
Trre15g03007 387 FunFam 26S proteasome regulatory subunit N7 12 338 - -
Trre15g03007 387 SUPERFAMILY "Winged helix" DNA-binding domain 283 364 IPR036390 -
Trre15g03007 387 Gene3D - 19 338 - -
Trre15g03007 387 Coils Coil 68 99 - -
Trre15g03007 387 Pfam PCI domain 253 355 IPR000717 -
Trre15g03007 387 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 288 371 IPR000717 -
Trre15g03007 387 ProSiteProfiles PCI domain profile. 191 359 IPR000717 -
Trre15g03007 387 Pfam 26S proteasome subunit RPN7 64 237 IPR045135 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g03007 Trre-Chr15 27121447 27125039 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g03007 K03037 - gmx:100810692 704.516
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g03007 15 27121447 27125039 Trre15g03007 15 27121447 27125039 ECH