Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g02975 ATGAATATTAATGGCTTCACCACTAACTTCCTCCATCTTCAACACAAACACAATCCCATTTCACTCAATTACCAATATCTCACTTCCATAAAAACCCTATCACCTCATATCACATGTCTCGCTGTCCACCATAACCTTCTCTATGCCGCTTCTCTCAACCTCATCAATGTTTTCGACCTCTCTTCCTCTCATTACACACACATCGACACCTTCAACGAAAACTCCGGTTCAGGTTTTGTCAAGTCCATCACCTTCAACGGTTCAAAAGTGTTCACTGCACACCAAGACTGTAAAATTCGCGTATGGCTTATCACATCTTCAAAACAACACCGTCTTATCTCCTCCCTTCCAACTGTCAAAGATCGGTTGCGCCGCGGCATCGTTCCTAAAAACTACGTCAACGTTCGACGTCACCGGAAGAGTCTTTGGATCCAACATAATGATACTGTGTCAGGTTTAGCAGTAAACCAGAAAGAGAAACTCATGTACTCTGTTTCATGGGACAAAACCATAGTCACACGGTTCGCAATTCGTTTCGGTACGCGGTACGGGTTCGGGTACGCGATTTGGGACTTATCTTCCGGTTACCGGTGTTTGGAGTCTTTTAACGGTCATGACGATGCTATTAACGCAGTTGTTGTTTCCAATAACGGCGCCATTTACACGGCGTCAGCTGATGGGTGTATCAAGGTTTGGAAGATGGATGATCAGGTGAAACGCTACATGTTGGTGAGTACGGTGGGGAAGCAGAAACCAGCCGTTAATGCGTTGGCATTGAACAGAAATGGTACGGTTTTGTTTTCCGGTGGGAGTGATGGTACGATTTGTTTGTGGGAGGAAAAAGAAAACGAAAACGACGTCGTGTTGATGGAAACGTTGAGGGGTCATAGTGGGGCAATACTTTGTTTGGTCAACGTTGATGATTTGTTGATGAGTGGGTCAGCAGATCTGACGGTGAGGATTTGGCAGAGGGAAAAGGGGAATGGTGGGTATTATTGTAGAGGAGTATTGGAAGGACATGAAAAACCGGTTAAGTCGTTGGTGGCGGTTTCCGGTAGTAGTCGTGGTGGTGAAGATGATGATGAATCTGATGGTGATGGGGTTTTGACACTGTTTAGTGGAAGCCTTGATGGGGATATTAAAGTGTGGGAAGTGTTTGGTTTGGTTTAA 1170 0.4513 MNINGFTTNFLHLQHKHNPISLNYQYLTSIKTLSPHITCLAVHHNLLYAASLNLINVFDLSSSHYTHIDTFNENSGSGFVKSITFNGSKVFTAHQDCKIRVWLITSSKQHRLISSLPTVKDRLRRGIVPKNYVNVRRHRKSLWIQHNDTVSGLAVNQKEKLMYSVSWDKTIVTRFAIRFGTRYGFGYAIWDLSSGYRCLESFNGHDDAINAVVVSNNGAIYTASADGCIKVWKMDDQVKRYMLVSTVGKQKPAVNALALNRNGTVLFSGGSDGTICLWEEKENENDVVLMETLRGHSGAILCLVNVDDLLMSGSADLTVRIWQREKGNGGYYCRGVLEGHEKPVKSLVAVSGSSRGGEDDDESDGDGVLTLFSGSLDGDIKVWEVFGLV 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g02975 389 ProSiteProfiles Trp-Asp (WD) repeats profile. 202 235 IPR001680 GO:0005515
Trre15g02975 389 Gene3D - 240 387 IPR015943 GO:0005515
Trre15g02975 389 SUPERFAMILY WD40 repeat-like 28 385 IPR036322 GO:0005515
Trre15g02975 389 Gene3D - 134 239 IPR015943 GO:0005515
Trre15g02975 389 ProSiteProfiles Trp-Asp (WD) repeats profile. 247 288 IPR001680 GO:0005515
Trre15g02975 389 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 293 323 - -
Trre15g02975 389 Gene3D - 21 125 IPR015943 GO:0005515
Trre15g02975 389 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 202 235 - -
Trre15g02975 389 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 247 279 - -
Trre15g02975 389 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 16 385 IPR045182 -
Trre15g02975 389 SMART WD40_4 195 233 IPR001680 GO:0005515
Trre15g02975 389 SMART WD40_4 64 103 IPR001680 GO:0005515
Trre15g02975 389 SMART WD40_4 330 384 IPR001680 GO:0005515
Trre15g02975 389 SMART WD40_4 286 323 IPR001680 GO:0005515
Trre15g02975 389 SMART WD40_4 23 59 IPR001680 GO:0005515
Trre15g02975 389 SMART WD40_4 240 279 IPR001680 GO:0005515
Trre15g02975 389 SMART WD40_4 137 175 IPR001680 GO:0005515
Trre15g02975 389 Pfam WD domain, G-beta repeat 291 322 IPR001680 GO:0005515
Trre15g02975 389 Pfam WD domain, G-beta repeat 197 233 IPR001680 GO:0005515
Trre15g02975 389 Pfam WD domain, G-beta repeat 251 278 IPR001680 GO:0005515
Trre15g02975 389 Pfam WD domain, G-beta repeat 333 383 IPR001680 GO:0005515
Trre15g02975 389 ProSiteProfiles Trp-Asp (WD) repeats profile. 293 323 IPR001680 GO:0005515
Trre15g02975 389 ProSitePatterns Trp-Asp (WD) repeats signature. 371 385 IPR019775 -
Trre15g02975 389 PRINTS G protein beta WD-40 repeat signature 220 234 IPR020472 -
Trre15g02975 389 PRINTS G protein beta WD-40 repeat signature 310 324 IPR020472 -
Trre15g02975 389 PRINTS G protein beta WD-40 repeat signature 371 385 IPR020472 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g02975 Trre-Chr15 26639736 26641840 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g02975 197 384 Acyl Lipid Metabolism Gene Families AT3G18860 26.263 1.30e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g02975 - - aprc:113874855 496.508
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g02975 15 26639736 26641840 Trre15g02975 15 26639736 26641840 ECH