Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g02896 ATGTCATCCGCAGTAAGAGATCATAGGATCATTCGCCGAATGACAAGCCTTCCACGAAGTTTAATGAGCTTCGTGGGAATAGGAAGAAGAAGAAATCAAAATGCAAATTTTCCATTGCAACCTCTAGACACTCCTCAACCACAAATTTCCTTAGCAACTCCAGAAGAGTGGATTTTTCTAGACAAATTTGAGCAACAATATGGCACAAAACATCCCTTCTTTTATGCATGTCGTTTCATTGAAGCAATGAAGTTAGCAGAACAAGATCAAAAGTTTGTGTTCATGTATCTCCATTCACAAAAACACCCTTTTGCAAACGTGTTCTGCAAGGAAACCTTGTGTTCTGAGCTAGTGACTCAGTTTCTTGATGTGAATTTTGTTTGTTGGGGTTCACTTGCAGATAGAGGGGAGGGTTTGCAAATGGTTGCATCATTGAGACCTTCTAATTTTCCTTGTTGTGCTGTCATAAGCCCTGCCCCTAATGATGGCATAATTGTGTTGCAACAGCTAGAGGGACCACTTTCACCAGCAGAGCTAGTGGAGATTCTACAAACAACATTGGAAGAACAAGGATTAGCTTTTGGAAGTGCTAAAGCGAAGCGAGATGAAAAGATTCGAGCAGATCGTAGACTTAGAGAAATGCAAGATGCTGCATATTTTAAGGCTTTACAAATAGACCAGGAAAAAGAGAAACTCAAAAGTTTATCTTCAAAAGAGAGAGTTCATAAGCCAGTGGAAACTCAAAACACTAGAAATTATGGGAAGTTAAGGAACAATTATGTTGATGTCACTAAATTTCATAACAGAGGAAATGGATCCACAAGTGAAAAACAAGACAAAGGAATCACAAGTAGTGGAAAGGAGACTCAAGTTGCACAGATACTCATAAGGTTTCCAAATGGAGAAAGAAGAGAACATAGTTTCCTATGCACAGACAAAATTCAGTCCATTTTTTCATATATTGATTCATTAGGTTTGTCTGGAATTGAGAACTATAGATTGATATCAAATTTTCCAAGAAGAGTTTATGGTGTTGATCAAATGAGAATGACTCTTAAAGATGTTGGCTTGTATCCTAAAGCTAGTTTGTTCTTGGAGCCTTTGTGA 1107 0.3794 MSSAVRDHRIIRRMTSLPRSLMSFVGIGRRRNQNANFPLQPLDTPQPQISLATPEEWIFLDKFEQQYGTKHPFFYACRFIEAMKLAEQDQKFVFMYLHSQKHPFANVFCKETLCSELVTQFLDVNFVCWGSLADRGEGLQMVASLRPSNFPCCAVISPAPNDGIIVLQQLEGPLSPAELVEILQTTLEEQGLAFGSAKAKRDEKIRADRRLREMQDAAYFKALQIDQEKEKLKSLSSKERVHKPVETQNTRNYGKLRNNYVDVTKFHNRGNGSTSEKQDKGITSSGKETQVAQILIRFPNGERREHSFLCTDKIQSIFSYIDSLGLSGIENYRLISNFPRRVYGVDQMRMTLKDVGLYPKASLFLEPL 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g02896 368 SMART ubx_3 285 367 IPR001012 GO:0005515
Trre15g02896 368 SUPERFAMILY Ubiquitin-like 285 367 IPR029071 -
Trre15g02896 368 CDD UBX 294 366 - -
Trre15g02896 368 Gene3D - 286 367 - -
Trre15g02896 368 Pfam UBX domain 288 366 IPR001012 GO:0005515
Trre15g02896 368 MobiDBLite consensus disorder prediction 266 286 - -
Trre15g02896 368 PANTHER FAS-ASSOCIATED PROTEIN 11 366 - -
Trre15g02896 368 SUPERFAMILY Thioredoxin-like 53 192 IPR036249 -
Trre15g02896 368 Coils Coil 197 217 - -
Trre15g02896 368 Gene3D Glutaredoxin 57 192 - -
Trre15g02896 368 ProSiteProfiles UBX domain profile. 287 365 IPR001012 GO:0005515
Trre15g02896 368 SMART 45neu3 58 184 IPR006577 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g02896 Trre-Chr15 25207509 25209481 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g02896 K18726 - gmx:100775212 538.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g02896 15 25207509 25209481 Trre15g02896 15 25207509 25209481 ECH