Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g02878 ATGCAATCCTTATCGTTAAGTAGTAGCAAGAGTTTGACGACGGGTTTGCGATTGGTAGGTCAGGATGCGAGGAGGCTCAAGAGAAAGAGCACCGTGGTCGCATGTGGTAGCAAAGACACTCCAACTCCAAGTTCAACCTCATTTCTCTCAAGGACTCAAACTTACGCTCTTTTGAAACAACAAATGGAAGTTGCTGCTAAATCCGAGGATTACAAGGAAGCTGCTAGAATTCGTGACTCGCTTAAGTTGTTTGAAGAGGAAGAGCCTGTTTTGCGTTTAAGGAGGTTAATTAAGGAAGCAATTTCTGATCAGAGGTTCCAGGATGCAGCTAGTTACCGTGATGAGCTAAAGAAAATTGCTCCACACTCTTTCTTAAAATGTTCCAGTGATGCTACAACACAGGGAGTCAGGGTTCAAGTCCGGAGTGTATATATAGAGGGCAGAAGTCAGCCTTCAAAGGGACTCTACTTTTTTGCATATAGAATAAGAATTACCAATAATTCAGAGGACACCGTTCAACTTCTTAGAAGGCATTGGATTATAACCGACGCTAATGGGAGAACAGAAAATGTACGGGGAATTGGGGTTGTTGGTGAACAGCCGGTACTTCTTCCCAGGACTAGTTTTGAGTATTCTTCAGCCTGCCCATTAAGCACACCAAATGGTAGAATGGAAGGTGAATTTGAGATGATCCATGTTGATAAAGTAGGCTCGCACTCATTTAATGCTATCATTGCCCCGTTTTCTCTCGCTCTGCTAGGAGATGATGACTGCAATACTATTTGA 786 0.4313 MQSLSLSSSKSLTTGLRLVGQDARRLKRKSTVVACGSKDTPTPSSTSFLSRTQTYALLKQQMEVAAKSEDYKEAARIRDSLKLFEEEEPVLRLRRLIKEAISDQRFQDAASYRDELKKIAPHSFLKCSSDATTQGVRVQVRSVYIEGRSQPSKGLYFFAYRIRITNNSEDTVQLLRRHWIITDANGRTENVRGIGVVGEQPVLLPRTSFEYSSACPLSTPNGRMEGEFEMIHVDKVGSHSFNAIIAPFSLALLGDDDCNTI 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g02878 261 ProSiteProfiles ApaG domain profile. 130 257 IPR007474 -
Trre15g02878 261 Gene3D ApaG domain 126 256 IPR036767 -
Trre15g02878 261 SUPERFAMILY C-terminal UvrC-binding domain of UvrB 53 85 IPR036876 -
Trre15g02878 261 ProSiteProfiles UVR domain profile. 52 87 IPR001943 GO:0005515
Trre15g02878 261 PANTHER OS05G0170800 PROTEIN 30 257 - -
Trre15g02878 261 ProSiteProfiles UVR domain profile. 87 122 IPR001943 GO:0005515
Trre15g02878 261 Pfam ApaG domain 148 231 IPR007474 -
Trre15g02878 261 SUPERFAMILY ApaG-like 132 251 IPR036767 -
Trre15g02878 261 Pfam UvrB/uvrC motif 92 119 IPR001943 GO:0005515
Trre15g02878 261 Pfam UvrB/uvrC motif 58 86 IPR001943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g02878 Trre-Chr15 25018465 25021423 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g02878 - K06195 gmx:100782176 383.645
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g02878 15 25018465 25021423 Trre15g02878 15 25018465 25021423 ECH