Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g02811 ATGGGTGACAATAAACGCAAAAGAGGTCGCAAACCCAAAAACCCTTCTCCCGAAACCCTAGAAACAACCGCTATCGCCGCCGCCGAACCTTCCCCTTCCAACGTCGACGATGATTTCTCCATCGGAAACGTTGAACTCATCGACAACAACACCGCCTCTTCTCAACTCGGCCGCGGTCGTGGACGCGGACGCCCTAAAAAACTCCCCACCGTTCCCGACAAGGCTCCCGCCGGACGCCGTGTCACCCGCGGTGTTGACAGTAACGGTGCTGTCCCGACCGTTCCGGTTGAAGTCGGGGGCGCTACTACCATGGATGCGGATCCTATATGGGAAAGCGTTTCGGCTAGGGTGATGCCGTCGATGGATTCGGTGGTGAAAGTGTTCTGTGTACATACAGAACCGAATTTTTCACTACCATGGCAGAGGAAGAGACAATACAGTTCTAGTAGTAGTGGGTTTGTGATAAGTGGGAAAAGGGTTCTCACTAATGCACATTCTGTTGAACATTATACTCAGGTGAAGCTCAAGAAACGTGGCTCTGATACTAAGTATTTGGCTACTGTTCTTGCCATTGGAACTGAGTGTGACATTGCCATGCTTACCGTTGATGATGATGAGTTCTGGCAAGGAATGTCACCTGTGGAGTTTGGGGAATTGCCTACCCTTCAAGATGCAGTAACTGTTGTGGGCTACCCAATTGGGGGAGACACTATCTCTGTGACCAGTGGTGTTGTATCACGTATTGAGATTTTATCTTATGTCCATGGTTCCACAGAACTTCTAGGTTTACAGATAGATGCTGCTATAAATTCTGGAAATTCTGGTGGACCTGCATTTAATGGTAAAGGAAACTGTGTGGGGATAGCATTTCAGTCCCTCAAACATGAAGATGTGGAAAATATAGGTTATGTCATTCCAACGCCAGTTATCATGCATTTCATCAAGGATTATGAGAAGAATGGAGGATATACTGGGTTTCCTATTCTTGGGGTTGAGTGGCAGAAAATGGAAAATCCTGATCTACGAATGTCAGTTGGCATGAAATCTGATCAGAAAGGTGTGCGTATCAGAAGAATTGATCCTACTTCTCCTGAATCTAAGGTTTTAAAACCGTCAGATGTTATCCTTAGCTTTGATGGGATTGATATTGCCAATGATGGAACAGTTCCATTTCGCCATGGAGAGCGCATTGGTTTCAGTTATCTCATATCACAGAAATATACTGGCGATGACGCAGCAATCAAAGTACTACGGAATTCAAATGTTCTCAAATTCAATATTAAACTTGATGGTCATAGAAGGCTTATTCCAGCACACAGCAAGGGCAAGCCTCCCTCATATTATATTATTGCAGGATTTGTTTTTTCAACTGTTTCAGTTCCTTATCTTCGTTCTGAGTACGGAAAGGACTATGAGTATGAAGCTCCGGTGAAGATTTTGGATAAACTGCTGTATGCAATGCCACAATCACCAGATGAACAACTTGTTGTGATTTCACAGGTGCTGGTGGCTGACATCAACATTGGATACGAAGAGATTGTTAACACCCAGGTCGTTGGTTTTAATGGTAAACCAGTGAAAAACCTTAAGAGCTTGGCTGCTATGGTAGAAAGCTGTGATGACGAGTATCTAAAATTTGATTTAGATTATGAACAGATAGTAGTCCTTCGCACAAAGACTGCAAAAGCTGCCACGCTAGATATTCTTGCAACACACTGCATTCCATCAGCAATGTCTGAAGATCTCAAGTCCTAG 1755 0.4444 MGDNKRKRGRKPKNPSPETLETTAIAAAEPSPSNVDDDFSIGNVELIDNNTASSQLGRGRGRGRPKKLPTVPDKAPAGRRVTRGVDSNGAVPTVPVEVGGATTMDADPIWESVSARVMPSMDSVVKVFCVHTEPNFSLPWQRKRQYSSSSSGFVISGKRVLTNAHSVEHYTQVKLKKRGSDTKYLATVLAIGTECDIAMLTVDDDEFWQGMSPVEFGELPTLQDAVTVVGYPIGGDTISVTSGVVSRIEILSYVHGSTELLGLQIDAAINSGNSGGPAFNGKGNCVGIAFQSLKHEDVENIGYVIPTPVIMHFIKDYEKNGGYTGFPILGVEWQKMENPDLRMSVGMKSDQKGVRIRRIDPTSPESKVLKPSDVILSFDGIDIANDGTVPFRHGERIGFSYLISQKYTGDDAAIKVLRNSNVLKFNIKLDGHRRLIPAHSKGKPPSYYIIAGFVFSTVSVPYLRSEYGKDYEYEAPVKILDKLLYAMPQSPDEQLVVISQVLVADINIGYEEIVNTQVVGFNGKPVKNLKSLAAMVESCDDEYLKFDLDYEQIVVLRTKTAKAATLDILATHCIPSAMSEDLKS 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g02811 584 SUPERFAMILY PDZ domain-like 352 434 IPR036034 GO:0005515
Trre15g02811 584 FunFam protease Do-like 9 209 319 - -
Trre15g02811 584 CDD PDZ_serine_protease 327 427 - -
Trre15g02811 584 Gene3D - 208 319 IPR043504 -
Trre15g02811 584 PANTHER - 84 582 - -
Trre15g02811 584 FunFam Protease Do-like 9 100 207 - -
Trre15g02811 584 Gene3D - 100 207 IPR043504 -
Trre15g02811 584 PRINTS HtrA/DegQ protease family signature 259 276 IPR001940 GO:0004252|GO:0006508
Trre15g02811 584 PRINTS HtrA/DegQ protease family signature 368 380 IPR001940 GO:0004252|GO:0006508
Trre15g02811 584 PRINTS HtrA/DegQ protease family signature 152 164 IPR001940 GO:0004252|GO:0006508
Trre15g02811 584 PRINTS HtrA/DegQ protease family signature 180 200 IPR001940 GO:0004252|GO:0006508
Trre15g02811 584 PRINTS HtrA/DegQ protease family signature 222 246 IPR001940 GO:0004252|GO:0006508
Trre15g02811 584 Pfam PDZ domain 436 581 IPR041517 -
Trre15g02811 584 Gene3D - 322 433 IPR036034 GO:0005515
Trre15g02811 584 Gene3D - 434 584 IPR046449 -
Trre15g02811 584 SUPERFAMILY Trypsin-like serine proteases 121 321 IPR009003 -
Trre15g02811 584 Pfam PDZ domain 338 429 IPR001478 GO:0005515
Trre15g02811 584 Pfam Trypsin-like peptidase domain 151 288 - -
Trre15g02811 584 MobiDBLite consensus disorder prediction 1 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g02811 Trre-Chr15 24131796 24137753 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g02811 K25897 - gmx:100791040 949.888
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g02811 15 24131796 24137753 Trre15g02811 15 24131796 24137753 ECH