Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g02804 ATGATTCCTCATCGCTACTATTCCGCGTGTCTCCTTCTCTTCCTCCTCCTACTTTCCACTTTCTCTTTCTCTCACTCACAATCCCATTCCTCTACCAAGAAAAAACGCATGAGAGAAAAAGTTCGCAAGATGTTTCATCATGCCTATGACAACTATATGACTCATGCATTTCCGCATGATGAGCTAAAACCTCTCACGAAAACTTTCACCGATTCCTTAAGCGAGCTTGGAAATTTGAAGCTTGAACGTTTGCCTCAAGATTACAATGGCTCTGCCCTTTCGCTTATTGAATCGCTATCTAGCCTTGTTATTATGGGGAACAATACCGAATTCGAGAAGGGAGTGCGCTGGCTTTCAGAAAATTTAACATTTGATGTTGATGCTCGCATAAATCTTTTTGAGTGCAACATTAGAGTTCTTGGTGGTCTTATCTCTGCTCATTTACTGGCATCTGATTCTTCAAAGAAGTTACTACAAGGATCGTACAATAATCAGCTACTTGGTCTGGCTGAAGATTTAGGGAAACGTTTTCTACCTGCATTCAATACGCCCACTGGATTACCATATGCATGGATTAACTTAAAGTATGGAGTAATGGAGAATGAGACTACAGAAACAAGCACTTCAGGGTGTGGTTCTCTGATTCTTGAAATGGGTGCTTTATCAAAATTGACCGGTGACCCCAGATATGAATCAGTAGCTTTACGAGCCCTTCATAAGCTATGGAGTATGCAGAGCTCATTAAAATTATTTGGAACCACACTTGATGTGTCAACCGGGCAATGGATTGAACATTCCTCGGGAATTGGAGCTGGGGTAGATTCCTTCTATGAATATCTACTTAAAGCACATATCCTTTTCGGAAAGGAGGAATTTTGGAGAATGTTTCATTCTGCTTATGTTGCTGTGCAAAAGCATTTCAGACACGGTCCCTGGTACCATGAAGCTGATATGAGGACAGGAAGAGCAACTTATTGGCAGCTTACGAGTCTTCAAGCATTTTGGCCTGGCCTACAGGTTCTTATTGGGGATATATCTGCTGCTAATTCATCTCACCGTGAGTTCTTCTATGTGTGGAAGAAATTTGGAGTGCTACCAGAAAGGTATTTGCTGGACCATCAGATGCTTCATCCAACTGAAAAATATTATCCATTACGCCCTGAGTTTGCTGAATCAACATTCTACTTATATCAAGCTACTAAAGATCCATGGTATCTTGAAGTCGGCGAATTAATAGTCAATTCCCTTAATATATACTCCAGAGTAGAAGGTGGGTTTGCAAGCATCAAGGATGTGACAACTATGCAGTTAGAAGATCATCAACATAGTTTTTTTCTTGCTGAAACGTGCAAATATTTATATCTTCTCTTCGATGATTCGTTTTTGCTCAAGAGTAATTACGTATTTACCACTGAAGGTCATCCCCTTCCGGTATTAAGCACTTGGCACGAAGAGCTTCCGGAAACTTATATTCCAACTAATTGGACCACCCTGAAGAAACAACCAACAAATCGAGCCAGTGCAATGTCTTTGCAAGTATGTCCTGCCATGACTTTAAATTCTGGTCAACATATAGAGAGTGCTTGCCACATCTCCGACGTTCGCATTGACCACAGGTGTTTGACTGATGAAGATTGTGGAGTTGATGCAACTACCTGCAGAAGAAGATCATGTAGCATGGCTGGTTATTGTGGGCTATGGCTCTTCATTATTTGA 1716 0.4108 MIPHRYYSACLLLFLLLLSTFSFSHSQSHSSTKKKRMREKVRKMFHHAYDNYMTHAFPHDELKPLTKTFTDSLSELGNLKLERLPQDYNGSALSLIESLSSLVIMGNNTEFEKGVRWLSENLTFDVDARINLFECNIRVLGGLISAHLLASDSSKKLLQGSYNNQLLGLAEDLGKRFLPAFNTPTGLPYAWINLKYGVMENETTETSTSGCGSLILEMGALSKLTGDPRYESVALRALHKLWSMQSSLKLFGTTLDVSTGQWIEHSSGIGAGVDSFYEYLLKAHILFGKEEFWRMFHSAYVAVQKHFRHGPWYHEADMRTGRATYWQLTSLQAFWPGLQVLIGDISAANSSHREFFYVWKKFGVLPERYLLDHQMLHPTEKYYPLRPEFAESTFYLYQATKDPWYLEVGELIVNSLNIYSRVEGGFASIKDVTTMQLEDHQHSFFLAETCKYLYLLFDDSFLLKSNYVFTTEGHPLPVLSTWHEELPETYIPTNWTTLKKQPTNRASAMSLQVCPAMTLNSGQHIESACHISDVRIDHRCLTDEDCGVDATTCRRRSCSMAGYCGLWLFII 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g02804 571 Pfam Glycosyl hydrolase family 47 44 477 IPR001382 GO:0004571|GO:0005509|GO:0016020
Trre15g02804 571 SUPERFAMILY Seven-hairpin glycosidases 35 491 IPR036026 GO:0004571|GO:0005509|GO:0016020
Trre15g02804 571 PANTHER ER DEGRADATION-ENHANCING ALPHA-MANNOSIDASE-LIKE PROTEIN 2 9 502 IPR044674 GO:0004571|GO:1904380|GO:1904382
Trre15g02804 571 Gene3D - 26 488 IPR012341 GO:0005975
Trre15g02804 571 PRINTS Glycosyl hydrolase family 47 signature 384 408 IPR001382 GO:0004571|GO:0005509|GO:0016020
Trre15g02804 571 PRINTS Glycosyl hydrolase family 47 signature 327 343 IPR001382 GO:0004571|GO:0005509|GO:0016020
Trre15g02804 571 PRINTS Glycosyl hydrolase family 47 signature 443 463 IPR001382 GO:0004571|GO:0005509|GO:0016020
Trre15g02804 571 PRINTS Glycosyl hydrolase family 47 signature 179 198 IPR001382 GO:0004571|GO:0005509|GO:0016020
Trre15g02804 571 PRINTS Glycosyl hydrolase family 47 signature 270 287 IPR001382 GO:0004571|GO:0005509|GO:0016020
Trre15g02804 571 PRINTS Glycosyl hydrolase family 47 signature 44 64 IPR001382 GO:0004571|GO:0005509|GO:0016020
Trre15g02804 571 PRINTS Glycosyl hydrolase family 47 signature 129 147 IPR001382 GO:0004571|GO:0005509|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g02804 Trre-Chr15 24000768 24005462 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g02804 11 567 Glycoside Hydrolase AT1G27520 77.005 0.0 916
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g02804 K10084 - gmx:100793674 994.571
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g02804 15 24000768 24005462 Trre15g02804 15 24000768 24005462 ECH