Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g02802 ATGGTTGTACTTTTCAATTTGCAGTTTTCTCGGTGGACTTTCTACAAACACCTTACGCCTCGGAAATTCACAACTCTCTGTCACCACAATTCCACCGCTAATTTATCCCATTTAGTAACCCTAACTTCCCGCCAGAAAGATCAAATTCATCTCTACGTCGACACACTTCTTCAATGGAACAAGCGCATGAATCTAACCGCTGTTAAAGAAGTAAATGAAGTTATGGAAAGACACATTGAGGACTCCCTCGCAATTTTGCCTCCTTTAAGCGATAGTTATATCAATCACTGCAGCGGCAATTCTATCGATAAGCTTAAACTTGTCGATGTTGGAACTGGTGCGGGGCTTCCTGGAGTAGTTTTGGCCATAGCTCGACCAGATTGGGATGTAACGCTGATGGAGTCTATGAACAAGCGTTGCATCTTCTTGGAGCATGTTGTCAGTGTTATCGGTTCTTCTAACATTCAAATTGTAAGAGGAAGAGCCGAGAGTTTGGGGCAGAATCTTTGCTTCAGAGAGAAATTTGACGTAGCAGTAGCCAGGGCAGTTGCAGAGACGAGAATATTAGCTGAGTATTGTCTTCCGTTGGTTCGTGTTGGGGGAATGTTTGTTGCTGCCAAAGGTCATGATCCTGAGGATGAAGTTAAGAAAGCTGAAAGCGCCATCAAGAAAATGGGTGCATCATTATTGCAAGTATGCTCAGTGGAATCGCAAAGCCCGTATGGTCAGCGTACTGCTGTCATATGTCTTAAGGATCATCCCACGCCACTGAAATATCCCCGTGGTCCTGGTACACCAGCTAAAGAACCATTGTAA 816 0.4424 MVVLFNLQFSRWTFYKHLTPRKFTTLCHHNSTANLSHLVTLTSRQKDQIHLYVDTLLQWNKRMNLTAVKEVNEVMERHIEDSLAILPPLSDSYINHCSGNSIDKLKLVDVGTGAGLPGVVLAIARPDWDVTLMESMNKRCIFLEHVVSVIGSSNIQIVRGRAESLGQNLCFREKFDVAVARAVAETRILAEYCLPLVRVGGMFVAAKGHDPEDEVKKAESAIKKMGASLLQVCSVESQSPYGQRTAVICLKDHPTPLKYPRGPGTPAKEPL 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g02802 271 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 37 271 IPR029063 -
Trre15g02802 271 NCBIfam 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG 51 243 IPR003682 GO:0005737|GO:0006364|GO:0008649
Trre15g02802 271 Gene3D Vaccinia Virus protein VP39 21 271 IPR029063 -
Trre15g02802 271 PANTHER S-ADENOSYL-L-METHIONINE-DEPENDENT METHYLTRANSFERASES SUPERFAMILY PROTEIN 3 271 IPR003682 GO:0005737|GO:0006364|GO:0008649
Trre15g02802 271 CDD AdoMet_MTases 106 204 - -
Trre15g02802 271 FunFam Ribosomal RNA small subunit methyltransferase G 25 271 - -
Trre15g02802 271 Hamap Ribosomal RNA small subunit methyltransferase G [rsmG]. 38 248 IPR003682 GO:0005737|GO:0006364|GO:0008649
Trre15g02802 271 Pfam rRNA small subunit methyltransferase G 46 236 IPR003682 GO:0005737|GO:0006364|GO:0008649
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g02802 Trre-Chr15 23982977 23986950 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g02802 K03501 - gmx:100818428 462.225
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g02802 15 23982977 23986950 Trre15g02802 15 23982977 23986950 ECH