Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g02776 ATGGTTTCCGATTCAATCGCCGCCGTTCCGATTCCCTCCGCCGCGAACACTAAGAACCCTGGCAAAAAGAAGAGGACGAACAGGTCCGCGAAATTGAAGCAGTATAAGATTGATGCGCGTCGTGAACAATGGCTATCTCAAGGTGCGGTCAAGAATAAGGGTTGTAAGGATGGAATGGATGATGATGTCCACGTGTCTTCGTCGCCGGTGGGGAAACAAGGCAAACAAGAATTGGAGAAATTGGCGACGAGGCGTAGAGGTGAAGAGGATGATGTGTTGATCCATCAAGACAGTGATTCGGAATCGCCGTCTAACAGTCCTGTAAGTCCTAATAGTAGTGTCTTGTGTGGTAATGATTCTGGGACGAATTTCACTGCTAGCAGCCGCGGTGGAAGCAGTAGTAGTAGTTCTAGCAGTGGTGGATGTTGCTCTGGGAATATTACGGAAGAAGAGGAAGATGATGATGAAGTGGAAGCAGAAGAGGATGATGGATGCTTGGATGATTGGGAGGCTGTGGCAGATGCTTTAGCCGCCGATGAGAAGCATCAAAACTCTTCCCATGATGAACCCGTTGTGGAAACAGATTCTTCACAATCTTGTGAAGTGACTAATGGTTCGGGTTTAGGTTATCCGAATTCCAAACCAGGGAGTGGTGGAATGGTTCCTTGGGGTTCTGCTAGTGGCAAAGCTTGGAGGGCTGATGATGCTTTTCGCCCTCAGACTTTGCCCAATCTTTCGAAGCAGCATAGTATGCCGAATCCAGACCGGCGTTTTGGAGGAGTGGGTCCCTGGTGTCGCACTTCTGTGCCATCGAATTGTCCAATTTGCTGTGAGGATCTTGACTTAACGGACACGAGTTTTCTTCCGTGCAATTGTGGTTTTCGGCTTTGTCTCTTTTGCCACAAGAGGATTCTTGAGCAAGATGCTCGTTGTCCTGGGTGCAGGAAGCAATATGAGTGTGAACCTATCGAGACAGAAGCAAGTGTGCGTGGTGGTAGCCTTACTCTTCGGTTGGCACGTTCTGTTAGCATGATCGAAAGGTCTTGA 1047 0.4871 MVSDSIAAVPIPSAANTKNPGKKKRTNRSAKLKQYKIDARREQWLSQGAVKNKGCKDGMDDDVHVSSSPVGKQGKQELEKLATRRRGEEDDVLIHQDSDSESPSNSPVSPNSSVLCGNDSGTNFTASSRGGSSSSSSSSGGCCSGNITEEEEDDDEVEAEEDDGCLDDWEAVADALAADEKHQNSSHDEPVVETDSSQSCEVTNGSGLGYPNSKPGSGGMVPWGSASGKAWRADDAFRPQTLPNLSKQHSMPNPDRRFGGVGPWCRTSVPSNCPICCEDLDLTDTSFLPCNCGFRLCLFCHKRILEQDARCPGCRKQYECEPIETEASVRGGSLTLRLARSVSMIERS 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g02776 348 MobiDBLite consensus disorder prediction 147 169 - -
Trre15g02776 348 FunFam RING/U-box superfamily protein 266 331 - -
Trre15g02776 348 Pfam RING/Ubox like zinc-binding domain 273 319 - -
Trre15g02776 348 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 265 330 IPR013083 -
Trre15g02776 348 MobiDBLite consensus disorder prediction 190 211 - -
Trre15g02776 348 SUPERFAMILY RING/U-box 271 324 - -
Trre15g02776 348 ProSiteProfiles Zinc finger RING-type profile. 273 315 IPR001841 -
Trre15g02776 348 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX RELATED 269 340 IPR039780 GO:0004842|GO:0030014
Trre15g02776 348 CDD mRING-HC-C4C4_CNOT4 273 316 IPR039515 -
Trre15g02776 348 MobiDBLite consensus disorder prediction 77 97 - -
Trre15g02776 348 MobiDBLite consensus disorder prediction 174 189 - -
Trre15g02776 348 MobiDBLite consensus disorder prediction 47 216 - -
Trre15g02776 348 MobiDBLite consensus disorder prediction 98 145 - -
Trre15g02776 348 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g02776 Trre-Chr15 23726951 23728164 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g02776 - - var:108330419 479.559
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g02776 15 23726951 23728164 Trre15g02776 15 23726951 23728164 ECH