Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g02520 ATGTACGGCCCGAGGGGGGCAATGTTGGGAAGCGGGGGGGTTTCGGACGGGTACGAGGTTGGCTCAAAGAGACAAAGAATGATGGAATCCAATCCATACTTCGCAGTGAGCAGCGGACCAGGCAGCTTTCAACATTACGGATATGCTGGTGGCTTCCAGCCCCCTCCTCCTTTTCCTGTGGTTCGTCTCAGGGGGCTTCCGTTTAACTGCACAGACATTGACATTTTGAAGTTCTTTGCTGGTCTGACCATTGTCGATGTGTTGCTGGTGAACAAGAATGGACGCTTCTCTGGAGAGGCCTTTGTAGTCTTTGCAGGAGCAATGCAGGTTGAGTTTGCTTTACAGAGGGATCGGCAGAACATGGGTCGCAGATATGTGGAAGTCTTCAGGTGTAAGAAGCAGGACTATTACAGTGCTGTTGCTGGTGAGGTCAGTTACGAAGGAATATATGACAATGATTACCATGGAAGCCCTCCTCCCTCCAGGTCCAAGAGGTTCAGCGATAAAGACCAAATGGAATACACTGAGATATTGAAGATGCGTGGACTTCCATTCAATGTGACTAAACCTCAAATTATTGAGTTTTTTAAAGATTACAAGCTGATAGAAGATAGGGTACACATTGCATGTCGCCCAGATGGTAAAGCTACTGGAGAGGCATATGTAGAGTTTGTTTCACCAGATGAGGCTAAGAGAGCAATGTTCAAGGATAAAATGACCATTGGATCGAGGTATGTGGAACTGTTTCCTTCTACACCAGATGAAGCTAGACGTGCCGAGTCAAGGTCAAGGCAGTAA 798 0.4724 MYGPRGAMLGSGGVSDGYEVGSKRQRMMESNPYFAVSSGPGSFQHYGYAGGFQPPPPFPVVRLRGLPFNCTDIDILKFFAGLTIVDVLLVNKNGRFSGEAFVVFAGAMQVEFALQRDRQNMGRRYVEVFRCKKQDYYSAVAGEVSYEGIYDNDYHGSPPPSRSKRFSDKDQMEYTEILKMRGLPFNVTKPQIIEFFKDYKLIEDRVHIACRPDGKATGEAYVEFVSPDEAKRAMFKDKMTIGSRYVELFPSTPDEARRAESRSRQ 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g02520 265 Gene3D - 59 141 IPR012677 -
Trre15g02520 265 Gene3D - 160 265 IPR012677 -
Trre15g02520 265 SUPERFAMILY RNA-binding domain, RBD 175 262 IPR035979 GO:0003676
Trre15g02520 265 SMART rrm1_1 177 249 IPR000504 GO:0003723
Trre15g02520 265 SMART rrm1_1 60 129 IPR000504 GO:0003723
Trre15g02520 265 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN-RELATED 52 257 - -
Trre15g02520 265 CDD RRM_hnRNPH_ESRPs_RBM12_like 60 129 - -
Trre15g02520 265 SUPERFAMILY RNA-binding domain, RBD 50 138 IPR035979 GO:0003676
Trre15g02520 265 CDD RRM_hnRNPH_ESRPs_RBM12_like 177 249 - -
Trre15g02520 265 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 176 253 IPR000504 GO:0003723
Trre15g02520 265 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 180 246 IPR000504 GO:0003723
Trre15g02520 265 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 62 124 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g02520 Trre-Chr15 21096504 21099242 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g02520 K12898 - gmx:100816391 485.723
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g02520 15 21096504 21099242 Trre15g02520 15 21096504 21099242 ECH