Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g02442 ATGGAATCAGTATCAAAAAAACCTAGACCAACAAAAATTGCAAAATACCCATCCAAATCCAAAAACCCTAATAGAAATTCAACCCCAATTCGTAAACCCGATAATAATAATAATAATAATCAATCAAACCAATTTCAATCACATCTTGATACCCCAAATGTTTCATCAACTGCTCGAACCCTTTGCAATCTTCTTACACGAACATCCCCTCAGGATATCGATTCGGCTTTATCCTCTTCAAAGATTCATCCTTCTGAAGAATGTGTTCATGAGGTTCTTAAGCTTTCTTACAATTACCCTTCTTCGGCCATCAAGTTTTTCCGCTGGGCCGGACGTTTGAGAAAACACTCGGCCCATGCGTGGAACTTGATGGTTGATTTATTGGGCCGGAATCAGCTTTTCGAGCCCATGTGGGATGCTGTTAGGACTATGAAACAGGAAGGTGTGCTGTCTTTGCCCACCTTTGTTTCGGTTTTTCAAAGTTATTGTATGGCTGGTAGGATTAATGAGGCTGTTATGAGTTTTGATGTGATGGATAGGTATGATGTTGAGAAGAATGTTGTGGCGGTTAATTCTTTGCTTAGTGCGATTTGTCGCGAAGAGAATCAAACATCGGCGGCTATGGAGTTTTTTGAGAAGGTTAAGGGGAAGGTTGATGTGGATGGGGATAGTTTTGCGATATTGTTGGAAGGATGGGAGAAAGAAGGCAATGCTGCTAAAGCTATGAGTACTTTTGGTGAGATGGTGATCCGTATTGGTTGGAGTCAGGACAATGTAGCGGCTTACGACGCACTTTTGATGACTCTACTTCGCGCTTTGCAGTTTAACGAGGTTGTGACGTTTCTTAAAGTTATGAAGGAACATGACTGCTTTCCAGGTTTGAAATTCTTTACCAATGCTCTTGATGTTTTTGTTAAAAGGAATGATGCTGCTCATGCCATCCCGATGTGGGATGTCGTGGTTGCTAGTGGATTATTGCCTAATTTGATCATGTACAATGCCATGATTGGGTTGCTTTGCAACAATGGCGAGATTGATCATGCATTTCGCTTGCTCGATGAGATGGTTCTCCACGGCGCTTTTCCCGACTCTTTGACGTATAACATGATTTTCGAGTGCTTGGTAAAGAACAAAAAGGTTCGTGAAATGGAGCAGTTCTTTGCCGAGATGATCAAGAACGAGTGGCCTCCTACAGCTTCTAATTGTGCGGTGGCCATCGAAATGTTGTTTAATTGTGATGACCCAGATACAGCACTTGAGATTTGGAGTTGCATGGTTGAAACTCATGTTGGTGCACTTGATGTGAGTGCAAATATGTTGCTTATTGGTCTTTGTAAATTGAAAAGACTGTCAGAGGCCAGAAGGTTTGCTGAAGAAATGCTGGATAAAAGGATCATCATATATGAACCTACAATGACCAAGTTGAAGGAAGTGTTCTATAAGGAGGGTAGAAGTGTAAGAGACAGATTTGATACTATTTACAGGAGGTGGAAAGCTCAAGTCAAGTTGTAA 1512 0.414 MESVSKKPRPTKIAKYPSKSKNPNRNSTPIRKPDNNNNNNQSNQFQSHLDTPNVSSTARTLCNLLTRTSPQDIDSALSSSKIHPSEECVHEVLKLSYNYPSSAIKFFRWAGRLRKHSAHAWNLMVDLLGRNQLFEPMWDAVRTMKQEGVLSLPTFVSVFQSYCMAGRINEAVMSFDVMDRYDVEKNVVAVNSLLSAICREENQTSAAMEFFEKVKGKVDVDGDSFAILLEGWEKEGNAAKAMSTFGEMVIRIGWSQDNVAAYDALLMTLLRALQFNEVVTFLKVMKEHDCFPGLKFFTNALDVFVKRNDAAHAIPMWDVVVASGLLPNLIMYNAMIGLLCNNGEIDHAFRLLDEMVLHGAFPDSLTYNMIFECLVKNKKVREMEQFFAEMIKNEWPPTASNCAVAIEMLFNCDDPDTALEIWSCMVETHVGALDVSANMLLIGLCKLKRLSEARRFAEEMLDKRIIIYEPTMTKLKEVFYKEGRSVRDRFDTIYRRWKAQVKL 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g02442 503 MobiDBLite consensus disorder prediction 17 53 - -
Trre15g02442 503 MobiDBLite consensus disorder prediction 1 53 - -
Trre15g02442 503 Pfam PPR repeat 154 181 IPR002885 -
Trre15g02442 503 Pfam PPR repeat 435 464 IPR002885 -
Trre15g02442 503 Pfam PPR repeat family 327 376 IPR002885 -
Trre15g02442 503 NCBIfam pentatricopeptide repeat 330 363 IPR002885 -
Trre15g02442 503 NCBIfam pentatricopeptide repeat 366 398 IPR002885 -
Trre15g02442 503 NCBIfam pentatricopeptide repeat 436 465 IPR002885 -
Trre15g02442 503 Gene3D Tetratricopeptide repeat domain 362 502 IPR011990 GO:0005515
Trre15g02442 503 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 328 362 IPR002885 -
Trre15g02442 503 Gene3D Tetratricopeptide repeat domain 68 203 IPR011990 GO:0005515
Trre15g02442 503 Gene3D Tetratricopeptide repeat domain 204 356 IPR011990 GO:0005515
Trre15g02442 503 PANTHER PPR_LONG DOMAIN-CONTAINING PROTEIN 18 462 - -
Trre15g02442 503 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 363 397 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g02442 Trre-Chr15 20293738 20295249 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g02442 115 495 Glycosyltransferase AT1G05670 21.875 3.10e-20 92.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g02442 - - gmx:100796114 722.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g02442 15 20293738 20295249 Trre15g02442 15 20293738 20295249 ECH