Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g02433 ATGCACTTCGCAATGGATTTCGCTAAACACATAACCACAAAACCTCCCTTAATCTTCACACGTCCTTTAACCTGGATCACTTCCACCATCCCCCGCTACCAAAGCCGCCAATCTCCACCGCCACCGCCGCCGCCACCGCCAGATTCAAACAAACCGCCACTAGCTTCCTTACTTTCTATCCTCACTCATAAAGTTCTAGATTCTTCCAAATGCAAAACGATTTTACCTCATTTAACTTCTCAAGAATTCGAACGCTTATTCTTCATTCATCATTCCACTGTTAACCTCAAAACGACGCTTGATTTCTTCCGTTTTGCTTCAACTCATTACAAGTTTCGTTTCACTGTTCGTTCTAATTGTCTTTTGATTCGTTTGCTTCTTGCTTCGAATCATTTGCCGCGTGCTAGGTTTATGTTGAAACGTTTAATCGACGGCAATGTTTTGACGCCCTTGAAAAATCTTGATGGTAGGCTTAGTGAAATTGCTTCGTCGTTTCTTGAACTGAATCGGTTAACGGATCGAAGTTATGGTGAATTGGATTTGTTGCTTCATATTTTGTGTTCACAGTTTCAGCATTTAGGTTTTCATTGGGCTTTTGATATTTTCACATTGTTTACTAGTAATGGTGTTTTTCCGTCGCTTAAAACATGTAATTTTTTGATGAGTTCTTTGGTGAGATCGAATGAACTTCACAAGAGTTATCGAGTTTTTGACGCGGTTTGTCGCGGTGGTTTTTCTCTTGATGTTTACACGTATGCGACTGCGATTAATGCGTTTAGTAAAGGTGGAAAGGTTGATGATGCTGTTGGTTTGTTTTTCAAAATGGAGGAGCAAGGTGTTTTGCCTAATGTGGTTACTTACAATAACTTGATTGATGGGTTATGTAAGAGTGGAAGGTTAGAAGAAGCTTTTAGGTTTAAAGATAAGATGGTTGAGAACAAAGTTAACCCTAGTTTAGTTACTTATGGTATTCTTGTTAATGGTTTGATGAAGGCTGAGAAATTTGATGAGGAAAGGGAATATGAATGA 1029 0.3916 MHFAMDFAKHITTKPPLIFTRPLTWITSTIPRYQSRQSPPPPPPPPPDSNKPPLASLLSILTHKVLDSSKCKTILPHLTSQEFERLFFIHHSTVNLKTTLDFFRFASTHYKFRFTVRSNCLLIRLLLASNHLPRARFMLKRLIDGNVLTPLKNLDGRLSEIASSFLELNRLTDRSYGELDLLLHILCSQFQHLGFHWAFDIFTLFTSNGVFPSLKTCNFLMSSLVRSNELHKSYRVFDAVCRGGFSLDVYTYATAINAFSKGGKVDDAVGLFFKMEEQGVLPNVVTYNNLIDGLCKSGRLEEAFRFKDKMVENKVNPSLVTYGILVNGLMKAEKFDEEREYE 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g02433 342 Pfam PPR repeat family 282 331 IPR002885 -
Trre15g02433 342 NCBIfam pentatricopeptide repeat 250 284 IPR002885 -
Trre15g02433 342 NCBIfam pentatricopeptide repeat 285 318 IPR002885 -
Trre15g02433 342 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 283 317 IPR002885 -
Trre15g02433 342 MobiDBLite consensus disorder prediction 32 53 - -
Trre15g02433 342 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3, MITOCHONDRIAL 88 337 - -
Trre15g02433 342 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 248 282 IPR002885 -
Trre15g02433 342 Pfam PPR repeat 244 276 IPR002885 -
Trre15g02433 342 MobiDBLite consensus disorder prediction 35 52 - -
Trre15g02433 342 Gene3D Tetratricopeptide repeat domain 186 341 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g02433 Trre-Chr15 20209611 20210725 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g02433 185 340 Miscellaneous Gene Families AT4G11690 30.994 1.26e-15 75.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g02433 - - gmx:100819570 404.445
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g02433 15 20209611 20210725 Trre15g02433 15 20209611 20210725 ECH