Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g02254 ATGTTGGAGGGTCGATCCTGCGTGGTTCCGAGGTTGTTTTCGAGTTCTTGCCAGGCAGACAACAATTGGTCTTTCATGAAATTCATGCCGGATTTGGATATAACAAATGGCAAGCGACCGATAGATAGTGACGATGAAGACGAGCGGATGCCGAGAAAGGTTAACAGGAGATTGGATTCTTGTTATCAAGCTGAGATGGATTCTGTTGTTCCGCAAATCGATCTGGATGATGAGAGGAAGGATTTTCAGCCGTTGAATGATTGCCCAAGAGTTGAAAAGGCTGTTGCTTTTTCTGTTCAGTTTACTGCTGAACAATCGCAGCTTTCATTGTTGCAGCTTTCATTGTCGATTTTCGGTGATGAACAACAGAAGACGCAGCAGCTTGATGATGGGAATTTGATGAATTCCAATGACGAGCCATCGGATGAGCAGAAGGGGCATTATGCAGGGGATTCATCAGATTCCAGTTCACTTTTGCCGCGCATGAATCGGGACAGCTCGATTACTTGTCTAAGCCGCTGTTCTAGGTCTGATTATGGTTCTCTTGCCTCGCTGAATAAGAGCTTCCGCAACATAATTCGGAGTGGTGAGCTCTATGCATGGAGGAGACTGAATGGTATCATAGAGCACTGGATTTATTTTTCATGTGCCCTCCTCGAATGGGAGGCCTATGATCCGATTCGCAATCGGTGGATGCATTTACCTAGAATGGCTTCTAACGAATGCTTCATGTGTTCCGATAAGGAGTCCTTAGCGGTAGGTACCGAGCTTCTTGTGTTTGGAAGGGAGTTGCAATCTCATGTCATATACAGATACAGTCTTTTGACAAACTCATGGGAATCCGGAATGAGGATGAATTTTCCAAGATGCTTGTTCGGATCTGCTAGCCTCGGAGAGATTGCAATTCTAGCTGGGGGTTGTGATTCAGAAGGACATATCCTCGACTCGGCTGAGCTCTATAATTCCGAGAATCAAACATGGGAAACACTCCCAAGCATGAACAAGCCGAGGAAGATGTGCTCAGGGGTGTTCATGGATGGAAAATTTTATGTTATTGGTGGAATCGGTGGGCGCGAATCCAAGCTTCTTACTTGCGGTGAGGAGTACAATTTACAAACTAGAACATGGAAAGAAATTCCTAACATGTCCCCTGGACGTAGTGCCAGGGGATCAGAGATGCCTGCTACGGCAGAGGCACCGCCTCTAGTTGCCGTTGTAAATAATGAATTATATGCCGCTGATTATGCTGACATGGAGGTGAAAAAGTACAATAAGGATACAAAATTATGGATTACGATGGGTAGATTACCGGAACGAGCAGCGTCAATGAACGGATGGGGTCTTGCATTTAGGGCATGTGGAAATAGGCTTATTGTTATTGGTGGACCAAGGAGTCATGGTGAGGGTTTTATTGAACTCAATTCATGGGTTCCTAGTGAAGGACCTCCACAATGGAATCTACTTGCAAGAAAACAATCCGTATGA 1485 0.4525 MLEGRSCVVPRLFSSSCQADNNWSFMKFMPDLDITNGKRPIDSDDEDERMPRKVNRRLDSCYQAEMDSVVPQIDLDDERKDFQPLNDCPRVEKAVAFSVQFTAEQSQLSLLQLSLSIFGDEQQKTQQLDDGNLMNSNDEPSDEQKGHYAGDSSDSSSLLPRMNRDSSITCLSRCSRSDYGSLASLNKSFRNIIRSGELYAWRRLNGIIEHWIYFSCALLEWEAYDPIRNRWMHLPRMASNECFMCSDKESLAVGTELLVFGRELQSHVIYRYSLLTNSWESGMRMNFPRCLFGSASLGEIAILAGGCDSEGHILDSAELYNSENQTWETLPSMNKPRKMCSGVFMDGKFYVIGGIGGRESKLLTCGEEYNLQTRTWKEIPNMSPGRSARGSEMPATAEAPPLVAVVNNELYAADYADMEVKKYNKDTKLWITMGRLPERAASMNGWGLAFRACGNRLIVIGGPRSHGEGFIELNSWVPSEGPPQWNLLARKQSV 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g02254 494 FunFam F-box/kelch-repeat protein SKIP11 204 490 - -
Trre15g02254 494 SMART kelc_smart 348 396 IPR006652 GO:0005515
Trre15g02254 494 SMART kelc_smart 300 347 IPR006652 GO:0005515
Trre15g02254 494 SMART kelc_smart 256 299 IPR006652 GO:0005515
Trre15g02254 494 MobiDBLite consensus disorder prediction 127 160 - -
Trre15g02254 494 PANTHER GALACTOSE OXIDASE/KELCH REPEAT PROTEIN-RELATED 151 493 - -
Trre15g02254 494 Gene3D - 205 482 IPR015915 GO:0005515
Trre15g02254 494 Pfam Kelch motif 336 383 IPR006652 GO:0005515
Trre15g02254 494 Pfam Kelch motif 288 334 IPR006652 GO:0005515
Trre15g02254 494 SUPERFAMILY Kelch motif 218 472 IPR015915 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g02254 Trre-Chr15 18442240 18443856 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g02254 165 381 EF-hand Containing Proteins AT4G39560 26.267 3.42e-08 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g02254 - - gmx:100791897 793.497
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g02254 15 18442240 18443856 Trre15g02254 15 18442240 18443856 ECH