Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g02224 ATGAGCATCTCCACCACTGTTTTTTCTGAGCCACTCTTCAACTTCAAACGTTGTAACTACCACAGATTAGCTAACATTTCCCATTCCAAGCTAAATCAACACACTCTCTCTTCCTCTTTTTTATCCTCCAATCATAAATATGATTCTTGTTCTTGGACATTGAATCCACCCCATAAGTTTCTATCTCCAAAATTTGAAACTTTTGCAACAAATACAGATACCCTTGAGTCGATTCAGTCTTCTGATGTTATTTTCAATCAGACTCATCCTATCAACAGAATTGAACTGGTGGAGGGAAAGATCTTTGTAAGATTAGATCAGGGAAAGGATTTGAAGAATTCAGAGCTTATAGTTGGTTGCAATCTACCAGGAAAATGGATTCTTCATTGGGGAGTTTCCCGTGTGGATGATATCGGAAGTGAATGGGATCAACCTCCCCGTGATATGATACCTCCTGGATCTATTCCTATAAAGGACTATGCTATAGAGACACCTTTGAAGAAATCATCATCTTCATCTGAAGGAGATACTTTTCATGAAGTCAGGATCGGTCTTAAACCTAGCGATGAGATTTCAGCGATTAATTTTGTTCTCAAGGACGAGGAAACTGGTGCTTGGTATCAACACAAAGGAAGAGACTTCAAAGTTCCTCTTGTCAACAATCTTAAGGAGGATGTTAATTTACTTGGACCTAAAACAGGCTTAAGTTTGTCACAAGGGGACATAGGGCAGATATCTAATGTTATCCTGAAGCCGGAATCAACCGTTGACAAAGTTCAAGATAACAACAGCGAATCCGAAAATCCAGAAAAGGAAAATAGTCAAGTAGAAGGTTTCAATGTAGAACTGTCTTTAACCAAGGAAGTTACTGTCAATAACTCTATCAGTGTCTCCATTAGGAAATGCTCCGAAACAGCTAAGTATCTTTTAGATTTAGAAACGGATATACCTGGAGATATTTTCCTTCATTGGGGAGTTTGTAGAGACGATTTAAAAATCTGGGAAGCTCCACCTGCTCCTCATCCACCACAAACTGTATCATTTAAAAAAACAGCTTTGAGAACTCAACTAAAGTCAAGAGGCAGTGGAGAGGGAAGTTCGGTACAAGTCTCTCTGGGAGAAGAATATTCAGGATTTCTCTTTGTTCTTAAGACAAATAAAAATACGTGGTTAAATAACAACGGAAATGATTTTTACGTCCCTCTCTCAACTCCCGGTAGCTTAATTATTGGTAACATTGAGGATCAAACAGAAGTCATAAAGAGTGAAGTTACTGAAGAGAAAACCGAAGAGGAATCTAACGCTGCATTTACCAATGAAATAATCAATGAAATAAGGAGTTTGGTTACAGGCATTTCATCTGTGAAGAGAAGAAAAACGAAATCCAAAGAAGCACAGGAAACCATTCTTCAAGAAATTGAAAGACTGGCCGCTGAAGCCTACAGTATTTTCAGAACTTCTGTTCCAACATTCTCAGAGGAAGATATTGTGGAATCTGAGGTTTCTTTGGAATCCGAATCACCTGAATTGCCACCAAAAATATGCTCAGGAACTGGCACAGGATATGAAATAGTATGCCAAGGGTTTAATTGGGAATCTAATAAATCTGGAAAATGGTACATAGAGCTTAAAGAGAAAGCAGAAGAACTATCGTCTCTTGGCTTCACTGTGATTTGGTTACCGCCACCTACAGATTCCGTTTCACCTGAAGGATACATGCCAAGGGATTTATATGATTTAAACTCTAGATATGGTACCATTGAAGAACTGAAGGATGTGGTGAAAACATTTCATAAATTTGGAATCAAAGTGCTAGGAGATGCTGTTTTGAATCACCGTTGTGCCCAGCATAAGAATCAGAATGGTGTTTGGAACATATTTGGAGGTCGTCTCAATTGGGATGATCGTGCAGTCGTAGCTGATGATCCACATTTTCAGGGGAGGGGCAACAAGAGTAGTGGAGATAATTTCCATGCGGCTCCAAACATTGATCATTCACAGGACTTTGTGAGAAACGATATTAAAGAATGGTTATGCTGGTTAAGAGATGAAATTGGATATGATGGGTGGAGGCTTGACTTTGTCAGAGGATTTTGGGGTGGTTATGTAAAGGACTACATGGATGCGACCAAACCTTACTTTTCCTTGGGAGAGTACTGGGATTCCCTCAGTTATACGTACGGTGAAATGGATCATAATCAAGATGCACACAGGCAGAGGATCGTTGACTGGATTAGTGCTGCCGGTGGTACTGCTGGTGCATTTGATGTTACAACCAAAGGAATTCTTCACTCTGCATTGGAAAGATGTGAATATTGGCGCTTGTCAGATCAGCAGGGAAAACCCCCCGGCGTTCTTGGATGGTGGCCATCTCGTGCTGTTACTTTTATAGAAAACCACGACACTGGTTCTACACAGGGTCACTGGAGATTTCCCCACGATAAAGAAATGCAAGGATATGCTTACACTCTTACTCACCCAGGAACTCCGTCAGTGTTCTTCGACCACATTTTCTCTCACTATAAAAAGGAAATAGCCGCACTTCTCTCTATTAGGAAACGGAACGGGATCAGCTGCAGAAGCAAAGTTGAAATTCACAAGTCAGAAAGGGATGTTTATGCCGCTATCATAGACGGAAAAATTGCAATGAAGATCGGTCCCGGTCATTTTGAACCACCTAGTGGTTCCCAAAACTGGTCATCAGCTTGGAAAGGAAGAGATTATAAGATTTGGGAGGATGCATCATAA 2748 0.4036 MSISTTVFSEPLFNFKRCNYHRLANISHSKLNQHTLSSSFLSSNHKYDSCSWTLNPPHKFLSPKFETFATNTDTLESIQSSDVIFNQTHPINRIELVEGKIFVRLDQGKDLKNSELIVGCNLPGKWILHWGVSRVDDIGSEWDQPPRDMIPPGSIPIKDYAIETPLKKSSSSSEGDTFHEVRIGLKPSDEISAINFVLKDEETGAWYQHKGRDFKVPLVNNLKEDVNLLGPKTGLSLSQGDIGQISNVILKPESTVDKVQDNNSESENPEKENSQVEGFNVELSLTKEVTVNNSISVSIRKCSETAKYLLDLETDIPGDIFLHWGVCRDDLKIWEAPPAPHPPQTVSFKKTALRTQLKSRGSGEGSSVQVSLGEEYSGFLFVLKTNKNTWLNNNGNDFYVPLSTPGSLIIGNIEDQTEVIKSEVTEEKTEEESNAAFTNEIINEIRSLVTGISSVKRRKTKSKEAQETILQEIERLAAEAYSIFRTSVPTFSEEDIVESEVSLESESPELPPKICSGTGTGYEIVCQGFNWESNKSGKWYIELKEKAEELSSLGFTVIWLPPPTDSVSPEGYMPRDLYDLNSRYGTIEELKDVVKTFHKFGIKVLGDAVLNHRCAQHKNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRNDIKEWLCWLRDEIGYDGWRLDFVRGFWGGYVKDYMDATKPYFSLGEYWDSLSYTYGEMDHNQDAHRQRIVDWISAAGGTAGAFDVTTKGILHSALERCEYWRLSDQQGKPPGVLGWWPSRAVTFIENHDTGSTQGHWRFPHDKEMQGYAYTLTHPGTPSVFFDHIFSHYKKEIAALLSIRKRNGISCRSKVEIHKSERDVYAAIIDGKIAMKIGPGHFEPPSGSQNWSSAWKGRDYKIWEDAS 915
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g02224 915 CDD AmyAc_arch_bac_plant_AmyA 524 863 - -
Trre15g02224 915 Pfam Alpha-amylase C-terminal beta-sheet domain 854 912 IPR012850 GO:0004556|GO:0005509|GO:0005975
Trre15g02224 915 SUPERFAMILY (Trans)glycosidases 520 840 IPR017853 -
Trre15g02224 915 MobiDBLite consensus disorder prediction 253 276 - -
Trre15g02224 915 SMART aamy 523 852 IPR006047 GO:0005975
Trre15g02224 915 Pfam Alpha amylase, catalytic domain 548 743 IPR006047 GO:0005975
Trre15g02224 915 MobiDBLite consensus disorder prediction 258 272 - -
Trre15g02224 915 Gene3D Glycosidases 523 856 - -
Trre15g02224 915 SMART alpha-amyl_c2 853 913 IPR012850 GO:0004556|GO:0005509|GO:0005975
Trre15g02224 915 PANTHER ALPHA-AMYLASE 491 912 - -
Trre15g02224 915 SUPERFAMILY Glycosyl hydrolase domain 857 912 - -
Trre15g02224 915 Gene3D - 857 913 IPR013780 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g02224 Trre-Chr15 18177634 18184712 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g02224 69 912 Glycoside Hydrolase AT1G69830 67.296 0.0 1177
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g02224 K01176 - gmx:100788193 1437.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g02224 15 18177634 18184712 Trre15g02224 15 18177634 18184712 ECH