Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g02067 ATGAATTTGAAATTTTGTCGTAATTTCGCAGGAGAAGCTCACTCCTTGAAGATAGAAAAGATTTTGTTTCAAGGAACGTCTGAATACCAGAAAGTCATGGTCTTCCAGTCATCAACGTATGGCAAGGTTCTTGTTTTGGACGGTGTTATTCAGCTCACAGAAAGGGACGAATGTGCCTACCAAGAAATGATCACTCATCTTCCTCTTTGCTCTATACCGAACGCTAAAAAGGTTTTGGTTATTGGTGGAGGTGATGGAGGAGTCCTGCGAGAAGTAGCACGTCATTCTTCAATTGAAAAGATAGACATTTGTGAAATTGACAATATGGTTGTTGAAGTCTCGAAACAATTTTTCCCTGAAGTTGCAGTAGGGTTTAATGATCCACGTGTGACACTTCGCATTGGTGATGGAGTTGCATTTTTGAAGGCAGCTCCAGAAGGAACTTATGATGCAGTTATAGTGGATTCATCTGACCCTATTGGTCCTGCTCAAGAGCTTTTTGAAAAGCCCTTCTTTCAGTCAGTGGCTAGGGCTCTTCGTCCCGGAGGAGTTATGTGCACTCAAGCAGAAAGTATATGGCTTCATATGGATATAATTGAGGACATTGTGTCCAATTGTCGTCAGATTTTCAAAGGCTCTGTCAACTATGCTTGGACTACAGTTCCAACATACCCAAGTGGGATGATTGGTTTTATGCTTTGCTCAACCGAGGGACCTCTTGTTGATTTCAAGCATCCAGTGAATCCCATAGACGAAAAAGAGTGTCAGAAGTCAGTAAGACCACTAAAATTTTACAACTCCGAGATTCATACAGCAGCTTTCTGTTTGCCGTCGTTTGCGAAAAGGAAGATTGGTTCCAAAGAAAATTGA 870 0.4161 MNLKFCRNFAGEAHSLKIEKILFQGTSEYQKVMVFQSSTYGKVLVLDGVIQLTERDECAYQEMITHLPLCSIPNAKKVLVIGGGDGGVLREVARHSSIEKIDICEIDNMVVEVSKQFFPEVAVGFNDPRVTLRIGDGVAFLKAAPEGTYDAVIVDSSDPIGPAQELFEKPFFQSVARALRPGGVMCTQAESIWLHMDIIEDIVSNCRQIFKGSVNYAWTTVPTYPSGMIGFMLCSTEGPLVDFKHPVNPIDEKECQKSVRPLKFYNSEIHTAAFCLPSFAKRKIGSKEN 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g02067 289 Gene3D Spermidine synthase, tetramerisation domain 4 53 IPR037163 -
Trre15g02067 289 ProSitePatterns Polyamine biosynthesis (PABS) domain signature. 78 91 IPR030373 -
Trre15g02067 289 Gene3D Vaccinia Virus protein VP39 54 289 IPR029063 -
Trre15g02067 289 NCBIfam spermidine synthase 11 279 IPR001045 GO:0003824
Trre15g02067 289 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 11 284 IPR029063 -
Trre15g02067 289 Pfam Spermidine synthase tetramerisation domain 10 54 IPR035246 -
Trre15g02067 289 Pfam Spermine/spermidine synthase domain 57 244 - -
Trre15g02067 289 PANTHER SPERMIDINE/SPERMINE SYNTHASE 8 286 IPR001045 GO:0003824
Trre15g02067 289 CDD AdoMet_MTases 77 188 - -
Trre15g02067 289 ProSiteProfiles Polyamine biosynthesis (PABS) domain profile. 1 236 IPR030374 -
Trre15g02067 289 PIRSF Spermidine_synth 4 289 IPR030668 GO:0006595
Trre15g02067 289 Hamap Polyamine aminopropyltransferase [speE]. 3 285 IPR001045 GO:0003824
Trre15g02067 289 FunFam Spermidine synthase 1 52 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g02067 Trre-Chr15 16824131 16827073 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g02067 K00797 - gmx:100776863 515.383
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g02067 15 16824131 16827073 Trre15g02067 15 16824131 16827073 ECH