Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g02064 ATGGCTCATTTTCATTTGAGACAAAAACTACTCTTCTCATTTCTTCTAATAATCCTTTGCTTCACAACAATTGTTTCTTCACATAGCAGACCCTATTCAACTCCAAGTGTCACACACTTAACTGATTCTTTTCCTCATGTACCAATAGAAAGTGCTTTTTCTAATGCTTTTGGTGCCTCACATGTCAAGTTTCTTAGTAATGGGTCCATGGCCACTTTGTCTCTTGACAAAATTTCAGGCTCTGGCTTGGTCTCTCAAAATAGATACTCCTATGGATTCTTTAGTGCTGCAATCAAATTACCTGCTGGTTTGTCACCTGGAGTTGTAGTTGCTTTTTATTTGTCAAATGCAGATAAATTTCCTCACAACCATGATGAGATAGATATTGAACTACTTGGTCATGACAAAAGAAATGATTGGGTGATTCAAACAAATCTTTATGCCAATGGAAGTGTCAGCACAGGAAGAGAAGAGAAATTCTATCTTTGGTTTGATCCAACACAGCAGCACCATTATTATAGCATCTTGTGGAACAGCTATCACACTGTGTTTTTTGTTGACAACATTCCAGTGAGGGAATTCATACACAAAAACACAAACCCATTTATATATCCATCAAAACCAATGTCACTATATGCAACAATATGGGATGGTTCAGAATGGGCTACACATGGAGGAAAATACCCTGTTAACTACAAATATGGACCATTTGTTGTTTCATTTACTGAAATGGAATTAAGTGGTTGCATAGCTGATCCAAAAGCACCAATTTCTTCATGTTCTAACTCAAATCCTTCACAACTAGACCCTAATGGAGCAGATTTTACTAAGCTTTCACAGCAACAAATTGCAGCTATGGATTGGGCTAGAAGAAAACTCATGTTTTATTCTTATTGTAATGATAGACATAGATACAAAGTTTTGCCACCAGAATGTCACTAA 942 0.3652 MAHFHLRQKLLFSFLLIILCFTTIVSSHSRPYSTPSVTHLTDSFPHVPIESAFSNAFGASHVKFLSNGSMATLSLDKISGSGLVSQNRYSYGFFSAAIKLPAGLSPGVVVAFYLSNADKFPHNHDEIDIELLGHDKRNDWVIQTNLYANGSVSTGREEKFYLWFDPTQQHHYYSILWNSYHTVFFVDNIPVREFIHKNTNPFIYPSKPMSLYATIWDGSEWATHGGKYPVNYKYGPFVVSFTEMELSGCIADPKAPISSCSNSNPSQLDPNGADFTKLSQQQIAAMDWARRKLMFYSYCNDRHRYKVLPPECH 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g02064 313 Gene3D - 32 312 - -
Trre15g02064 313 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 276 312 IPR010713 GO:0005618|GO:0016762|GO:0044042|GO:0048046
Trre15g02064 313 Pfam Glycosyl hydrolases family 16 52 233 IPR000757 GO:0004553|GO:0005975
Trre15g02064 313 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 42 241 IPR000757 GO:0004553|GO:0005975
Trre15g02064 313 PIRSF EndGlu_transf 8 313 IPR016455 GO:0010411|GO:0016762|GO:0042546
Trre15g02064 313 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 49 312 IPR044791 GO:0004553
Trre15g02064 313 SUPERFAMILY Concanavalin A-like lectins/glucanases 53 312 IPR013320 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g02064 Trre-Chr15 16765678 16767790 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g02064 15 313 Glycoside Hydrolase AT1G10550 62.500 3.19e-141 399
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g02064 K08235 - gmx:100778993 535.028
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g02064 15 16765678 16767790 Trre15g02064 15 16765678 16767790 ECH