Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g02061 ATGATGACGTTGAGCGCAGTCGCACACTCAACATTTCTTCTTCTACCCACCATTCCTCTCAAAACCTTTTCTTTCACCAAAACGTCGCCGTTTCTCATTTCTCTTACCACTCCTTCTCGCTGCTATCTTTCTGCTTCCGCTCTTCCTTCTCTCTCCACTGACATTGACTTTAATTTCTCTGATTCTTCTGGAGATGGAAATGGTGTTGCAATTTCAAGGAAAAGTTCAAAAGTGCTTCTTAAAGGGATGACTTATTCTGAACTTGAAAAATGGGTTCAATCACATGGATACAGACCAGGGCAGGCCATGATGTTATGGAAGCGTATGTATGGAAACAACATTTGGGCGCATCATAGTGATGAGTTGGAAGGTTTGAACAAAGATTTCAAGAAGATGTTGAGTGAAAATGCAGATTTCAAGGCACTTGCCGTGAAAGAAATTCACGCAGCGTCTGATGGAACTAGAAAGATTTTATTCACGTTAGATGATGGATTGGTCATAGAAACAGTTGTGATACCTTGTGATCGAGGCAGAACTACTGTGTGTGTTTCCAGTCAAGTTGGATGTGCCATGAATTGTCAATTTTGCTATACTGGAAGAATGGGCCTTAAGAGACATCTTACTGCGGCAGAAATAGTTGAGCAGGCCGTTTTTGCCAGACGGCTATTTACAAGTGAAGTTGGTTCCATCACCAATGTTGTGTTTATGGGCATGGGGGAACCTCTTCATAACATTGATAATGTCATTAAAGCTGCAGATATTATGGTGGATGATCAAGGGCTTCATTTCAGCCCCCGCAAGGTTACTGTTTCAACCAGTGGACTTGTTCCGCAGCTCAGACGTTTCCTTCAGGAATCCAAGTGTACTATTGCTGTTAGTTTGAATGCAACCACTGATGAGGTAAGAAACTGGATCATGCCTATAAATCGAAAGTATAAACTGGACTTGCTTCTTGAGACGCTTCGGGAGGAGCTTTCCTTCAAACACAAATATAAGGTTCTATTTGAGTATGTGATGCTTGAAGGAATTAATGACAGCAATGAAGATGCAAAGAGGCTTATTGAACTTGTGAAGGGGATCCCTTGCAAGGTCAATCTCATCACATTCAATCCGCATAGTGGATCCTTCTTCAAACCAACTAAAGAGGAAAGGATGATTGAATTCCGAAATATGCTAGCTGAGGCAGGATGCGTAGTCCTTTTAAGACCGAGTAGAGGTGATGATCAAATGGCTGCATGTGGTCAGTTAGGCAAGCCCGGCACCATTCAAGCTCCGATGCTCCGTGTCCCTCAGCAATTCCAAATGGCAGTAGGAAGTTCAACGTGA 1326 0.4276 MMTLSAVAHSTFLLLPTIPLKTFSFTKTSPFLISLTTPSRCYLSASALPSLSTDIDFNFSDSSGDGNGVAISRKSSKVLLKGMTYSELEKWVQSHGYRPGQAMMLWKRMYGNNIWAHHSDELEGLNKDFKKMLSENADFKALAVKEIHAASDGTRKILFTLDDGLVIETVVIPCDRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLFTSEVGSITNVVFMGMGEPLHNIDNVIKAADIMVDDQGLHFSPRKVTVSTSGLVPQLRRFLQESKCTIAVSLNATTDEVRNWIMPINRKYKLDLLLETLREELSFKHKYKVLFEYVMLEGINDSNEDAKRLIELVKGIPCKVNLITFNPHSGSFFKPTKEERMIEFRNMLAEAGCVVLLRPSRGDDQMAACGQLGKPGTIQAPMLRVPQQFQMAVGSST 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g02061 441 Pfam Radical SAM superfamily 184 350 IPR007197 GO:0003824|GO:0051536
Trre15g02061 441 ProSiteProfiles Radical SAM core domain profile. 175 408 IPR007197 GO:0003824|GO:0051536
Trre15g02061 441 SFLD Radical SAM 74 418 IPR007197 GO:0003824|GO:0051536
Trre15g02061 441 Gene3D - 77 139 - -
Trre15g02061 441 SFLD adenosine C2 methyltransferase (RlmN-like) 74 418 IPR004383 GO:0006364|GO:0008173
Trre15g02061 441 CDD Radical_SAM 188 388 - -
Trre15g02061 441 Pfam 4Fe-4S single cluster domain 188 293 - -
Trre15g02061 441 FunFam Radical SAM superfamily protein 77 140 - -
Trre15g02061 441 PANTHER 23S RRNA METHYLTRANSFERASE 67 424 IPR040072 -
Trre15g02061 441 FunFam Dual-specificity RNA methyltransferase RlmN 142 421 - -
Trre15g02061 441 Hamap Dual-specificity RNA methyltransferase RlmN [rlmN]. 77 422 IPR027492 GO:0030488|GO:0070475
Trre15g02061 441 NCBIfam 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN 74 417 IPR027492 GO:0030488|GO:0070475
Trre15g02061 441 SUPERFAMILY Radical SAM enzymes 177 395 - -
Trre15g02061 441 Gene3D Aldolase class I 141 422 IPR013785 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g02061 Trre-Chr15 16712768 16718750 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g02061 K06941 K22544 gmx:100813692 686.411
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g02061 15 16712768 16718750 Trre15g02061 15 16712768 16718750 ECH