Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g01843 ATGGTAATAGTTGCATTATCTTCTTCCCTCCCTGGGAGGGCCAACCTCTTCTCCTCCTTACCTCCACCCAACAACAACCCAACCTCCTCCTCCTCATCCGCTACTCCTCGTCCCCCTATCCCCATTCCCAAATACCCTCCCCCTAAAAAATCCCAACCACCACCACCACCACCACCAAACCCGGCTCTCAAACACCACAACAACTCCAAATACTATAAACCCATAAAAAACCCCATAGTCATCACCTCCGAAGGAGACCGTTCCGTTATAATCGGCGAATCTGGCGTTTCCTATCTTCTCCCTGGCGCACCTTTCGAATTCCAGTTTAGTTACTCCGAGACACCAAAAGTGAAACCGTTGGCGATTCGTGAACCGGCGTTTTTACCGTTTGAACCGCCGACAATGCCGAGACCGTGGACCGGTAAAGCTCCGTTGAAGAAATCGAAGAAGAATATTCCTCTTTTTGATTCGTTTAATCCTCCACCTGCTGGTATGAAAGGTGTTAAGAAAGTTGAAATGCCGGGTCCGTTCCCGCTTGGGAAGTTTCCAGAAGAAGGAATGAGTAGAGAGGAGATACTTGGTGAGCCTCTTAAGAAATGGGAGGTGCAAATGCTTGTTAAGCCTATGATGTCCGATAATCGCCAGGTTAATCTCGGAAGGGATGGATTAACGCATAACATGTTGGAGTTGATACATTCACATTGGAAGCGTCGCCGTGTTTGTAAAATTCGTTGTAAAGGTGTTCCCACTGTTGATATGGAGAATGTTTGCCGCCATATTGAGGAGAAAGCAGGGGGGAAAATAATACATCGAGTTGGTGGTGTAGTTTATCTTTTCCGTGGCAGAAATTACAACTACCGTACTCGTCCACAGTATCCAGTGATGCTCTGGAAGCCAGCTGCTCCTGTTTATCCAAAACTTATACAAGATGCTCCAGAAGGATTAACGAAAGCTGAAGCAGACGAGTTACGGATGAAAGGGAAAAGCCTGTTGCCTATATGTAAATTAGCCAAAAATGGAGTATACACAACACTTGTAAAGGATGTCAGAGATGCTTTTGAAGGGAGTCATTTGGTGAAGATTGACTGCAAGGGATTGGACCCTAGTGATTACAAGAAATTAGGTGCCAAGCTTAAGGATTTGGTTCCTTGTGTGCTATTGTCTTTCGATGATGAACAGGTATTGATTTGGAGGGGCAAAGACTGGAAATCAATGTACCCACAAGCTCCAGTTTTTCCTCCTGCTGCAATTGGCATTACAAGGAATTTGAACAATACAGGCAAGGTTGGTGATAATCAATCAAAGGATAGTGGCAACATGGTCAAAACAAGTTTGAAAATGTTATCTCTATGGAAGAGTGCAATTGAGGCAAACAAGGCTTTGTTGTTAGAAGAATTTAATCTTGGTCCTGATGCTCTCTTGGAGAAGGTAGAAGAATTTGAGGGTATTTCACATGCCACAGAACACTCCTATCCAGCATTTACTTCTTCAAGTGAAAATGCTTTTGAAAGATACCTTGAAGATGGTACTGAAGACAACTATTCAAGTGACGGCGTAGAGGATGTTGATGATTATGACAGCAACAATGATGACGATGATGATGAAGAAGAAGATGATGATTACTACAATGATGATGAAGACGACGAGTTTAATGATATAGTGGATACATCTGCTCAACCCGGATCGCTACCAATTGATTTGCTTGTTAATAAGCTCAAATTTAGACAAAAGGATTAA 1737 0.4335 MVIVALSSSLPGRANLFSSLPPPNNNPTSSSSSATPRPPIPIPKYPPPKKSQPPPPPPPNPALKHHNNSKYYKPIKNPIVITSEGDRSVIIGESGVSYLLPGAPFEFQFSYSETPKVKPLAIREPAFLPFEPPTMPRPWTGKAPLKKSKKNIPLFDSFNPPPAGMKGVKKVEMPGPFPLGKFPEEGMSREEILGEPLKKWEVQMLVKPMMSDNRQVNLGRDGLTHNMLELIHSHWKRRRVCKIRCKGVPTVDMENVCRHIEEKAGGKIIHRVGGVVYLFRGRNYNYRTRPQYPVMLWKPAAPVYPKLIQDAPEGLTKAEADELRMKGKSLLPICKLAKNGVYTTLVKDVRDAFEGSHLVKIDCKGLDPSDYKKLGAKLKDLVPCVLLSFDDEQVLIWRGKDWKSMYPQAPVFPPAAIGITRNLNNTGKVGDNQSKDSGNMVKTSLKMLSLWKSAIEANKALLLEEFNLGPDALLEKVEEFEGISHATEHSYPAFTSSSENAFERYLEDGTEDNYSSDGVEDVDDYDSNNDDDDDEEEDDDYYNDDEDDEFNDIVDTSAQPGSLPIDLLVNKLKFRQKD 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g01843 578 Gene3D - 315 409 IPR035920 -
Trre15g01843 578 Gene3D - 196 292 IPR035920 -
Trre15g01843 578 MobiDBLite consensus disorder prediction 34 63 - -
Trre15g01843 578 MobiDBLite consensus disorder prediction 12 69 - -
Trre15g01843 578 MobiDBLite consensus disorder prediction 509 561 - -
Trre15g01843 578 FunFam CRS2-associated factor 1, chloroplastic 314 409 - -
Trre15g01843 578 SUPERFAMILY YhbY-like 196 290 IPR035920 -
Trre15g01843 578 MobiDBLite consensus disorder prediction 513 553 - -
Trre15g01843 578 SMART CRS1_YhbY_2 197 280 IPR001890 GO:0003723
Trre15g01843 578 SMART CRS1_YhbY_2 315 398 IPR001890 GO:0003723
Trre15g01843 578 ProSiteProfiles CRM domain profile. 195 291 IPR001890 GO:0003723
Trre15g01843 578 ProSiteProfiles CRM domain profile. 313 409 IPR001890 GO:0003723
Trre15g01843 578 Pfam CRS1 / YhbY (CRM) domain 315 398 IPR001890 GO:0003723
Trre15g01843 578 Pfam CRS1 / YhbY (CRM) domain 199 280 IPR001890 GO:0003723
Trre15g01843 578 FunFam CRS2-associated factor 1, chloroplastic 196 291 - -
Trre15g01843 578 SUPERFAMILY YhbY-like 315 406 IPR035920 -
Trre15g01843 578 MobiDBLite consensus disorder prediction 12 33 - -
Trre15g01843 578 PANTHER CRS2-ASSOCIATED FACTOR 1, CHLOROPLASTIC 41 571 IPR044599 GO:0000373
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g01843 Trre-Chr15 14902870 14909272 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g01843 - - gmx:100801953 783.482
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g01843 15 14902870 14909272 Trre15g01843 15 14902870 14909272 ECH