Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g01361 ATGTTTCAACATTTCACTTCTTGCTTCACCTTTCTTCATAACATCAAACCAAGAAAAAGACGACCCAACAACAGATTTTCTTCCATTTCCGACATATCAATCTCTTCTTTCATTCACATGGAAGTATCTGGCCAATTTCGACAAGTTTTCAAGCTCATCGACACAAACGGCGACGGAAAGATTTCAACCATAGAGCTTTGTGAAATGCTTTCATCTCTAGGATACAATAAGTACACAGCTACTAAAGAAGCTGAGAATATGATAAGAGAATTGGACTTCAATGGAGATGGATTTGTAGATATAGATGAGTTCATGTTTGTCATGAAAGAAGATAACTATGGTAAAGGAAAAGAGCATGATCATGATGAGTACTTAATGGATGCTTTTCTTGTGTTTGATAGTGATAAAAATGGATTAATCTCACCAAAGGAATTGAGGAGTGTTTTGATCAATCTTGGATGTGATAATTGTAGTTTAAGGGATTGTAAACGTATGATTAAAGGAGTTGATAAGAATGGTGATGGGTTTGTGGATTTTGAAGAATTTCGGTCTATGATGAACTTAAAAATTAGAGCTTGA 579 0.3472 MFQHFTSCFTFLHNIKPRKRRPNNRFSSISDISISSFIHMEVSGQFRQVFKLIDTNGDGKISTIELCEMLSSLGYNKYTATKEAENMIRELDFNGDGFVDIDEFMFVMKEDNYGKGKEHDHDEYLMDAFLVFDSDKNGLISPKELRSVLINLGCDNCSLRDCKRMIKGVDKNGDGFVDFEEFRSMMNLKIRA 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g01361 192 SMART efh_1 161 189 IPR002048 GO:0005509
Trre15g01361 192 SMART efh_1 83 111 IPR002048 GO:0005509
Trre15g01361 192 SMART efh_1 45 73 IPR002048 GO:0005509
Trre15g01361 192 SMART efh_1 124 152 IPR002048 GO:0005509
Trre15g01361 192 CDD EFh 124 186 IPR002048 GO:0005509
Trre15g01361 192 ProSiteProfiles EF-hand calcium-binding domain profile. 79 114 IPR002048 GO:0005509
Trre15g01361 192 Pfam EF-hand domain pair 46 109 IPR002048 GO:0005509
Trre15g01361 192 Pfam EF-hand domain pair 123 186 IPR002048 GO:0005509
Trre15g01361 192 ProSiteProfiles EF-hand calcium-binding domain profile. 120 155 IPR002048 GO:0005509
Trre15g01361 192 ProSitePatterns EF-hand calcium-binding domain. 54 66 IPR018247 -
Trre15g01361 192 ProSitePatterns EF-hand calcium-binding domain. 133 145 IPR018247 -
Trre15g01361 192 ProSiteProfiles EF-hand calcium-binding domain profile. 157 192 IPR002048 GO:0005509
Trre15g01361 192 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 124 187 - -
Trre15g01361 192 ProSiteProfiles EF-hand calcium-binding domain profile. 41 76 IPR002048 GO:0005509
Trre15g01361 192 CDD EFh 45 109 IPR002048 GO:0005509
Trre15g01361 192 Gene3D - 113 191 - -
Trre15g01361 192 ProSitePatterns EF-hand calcium-binding domain. 170 182 IPR018247 -
Trre15g01361 192 ProSitePatterns EF-hand calcium-binding domain. 92 104 IPR018247 -
Trre15g01361 192 SUPERFAMILY EF-hand 41 187 IPR011992 -
Trre15g01361 192 FunFam Calmodulin 1 36 189 - -
Trre15g01361 192 Gene3D - 18 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g01361 Trre-Chr15 10596131 10596709 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g01361 45 191 EF-hand Containing Proteins AT1G24620 46.259 1.35e-33 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g01361 - - tpra:123897853 350.517