Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g01348 ATGCTTCGACGTCCTGCTGAGGTACTTGGACAAGTCCATGTTGCTACACGAATGCGACCTGTGGATGCCTTGTGGGCTGTGGCTTATGGTGGCCCATTGTCTTTGCTTCCCTTATCAATAAGTAATATACAGGAGAATACTCTTGAACCACATCAAGGGAATTTTTCTGTGTCAGTGGCAACTACATCTCTTGCTGCTCCGATATTTCGAATTATATCTACAGCTATTCAATATCCGAGGAATAGTGAGGAGCTGGGTCGTTGCAGAGGGCCTGTAGTTCTTTCTAAGATTCTAAACTATCTTCTCCAAACCCTATCTTCACTTGGTATTGGACGAGACGATGGTGTAGGGGATGAAGAACTTGTTGCAGCAGTTGTCTCACTTTGTCTATCTCAGAAGATCAACCACACACTGAAACTGCAGCTCTTCACCACACTGCTGCTTGATATAAAAATTTGGAGTTTATGTAGTTATGGAATACAGAAGAAGCTTCTATCATCACTTGCTGACCTGGTTTTCACCGAGTCTGCAGTGATGCGAGATGCCAATGCCATTCAGGTGCTTCTTGATGGCTGCAGAAGATGTTACTGGACCGTTCTTGAAAAGGATTCAGTAAATACTGTTCCTCTAACTGGAGCAACAAGACCAGTGGGTGAGGTCAATGCTTTGGTTGACGAGCTCTTGGTGGTTATTGAACTTCTAATAGTGGCAGCATCTCCTTCATTGGTCTCTAATGATGTTCGATGTTTACTTGGGTTCATAGTTGACTGTCCACAACCTGGTCAGATTTCTAGGGTATTGCATCTCTTCTACAGGTTGGTTATTCAGCCAAATACATCTAGAGCTCACACATTTGTAGAAGCATTCCTAGCCTGTGGTGGGATTGAAACTCTTCTTGTTCTTCTCCAAAGGGAAGCTAAAACTGGAGAAATTGCTGTCCAGGAATCAGTTTCAAAATTACCTGGACTCGGAACAAATGAAACTGATGCTAGCTGTGAGATCATACACACATGCGAGGATGATGAAGGGTCAGATGTGAGAAGTGAAGCCATTTTACAAGACAACGATCAAGGTTATGAATCTGTTGATAGTTGCAGCAACCTTGATTTTGGTTCTCCTTATAGGAATATTTCAAGAACGACATCTGCCTCTGAAATTCCAAATGTTAAGAATTTGGGAGGCATTAGTCTTTCCATCAGTTCTGACAGTGCTAGAAAAAATGTTTATAATGTTGATAAAAGTGATGGCATAGTTGTTGGGATCATAGGTCTCTTAGGTGCTTTAGTAGTTTCTGGGCATTTGAGGTTCGGCTCCCGTGGTGTTCCTGATACAACAAGCAACCTTTTGGGTGTATCGCGTGATGGAGGTGGTACAATGTTTGATGATAGGGTTTCTCTTCTTCTTTTTTCCTTACAGAAGGCATTCCAAGCTGCACCCAACAGGCTAATGACTAACAATGTCTATACGGCTTTATTGGCTGCTTCGATAAATGCTTCTTCAACAGAGAATGGGCTGAACTTCCATGATTTAGGTCATCGCTTTGAGCATTTGCAACTTTTATCGGTGCTTTTGCATTCCCTTCCATTTGCACCTAGGCCTCTGCAGAGTAGAGCATTACAGGATCTTCTATTTTTGACTTGCAGTCATCCAGAAAACAAAGGCAGACTAGCAGATATGGAAGAATGGCCTGAATGGATTCTCGAGATTATGATTTCAAACTATGAGTTGGGTCCAAGCAAACCATCTGATTTGACAAGCCTAGGAGACATAGAGGACCTCTTACATAAATTCCTTATTATCATGCTAGAGGATTCAATGCGCCAAAAAGATGGATGGAAGGATATTGAAGCAACAATTCATTGTGCAGAATGGCTCTCTATTATTGGTGGATCTAGCACAGGAGAACAGCGAATTAGACGTGAAGAATCGTTACCTATATTTAAGAGAAGACTCTTAGGTGGCTTGATGGACTTTGCAGCCAAAGAATTGCAGATCCAGACCCAAATTATTGCTGAAGCAGCTGCTGGTGTTGCAGCTGTGGGTTTGTCTCCAGACGATGCTAAGGCAGAGGCAGAGAATGCTGCTCACCTGTCTGTGGCTTTAGTAGAAAATGCTATTGTGATACTTATGCTTGTTGAGGATCATTTACGGTTACAGAGCAAACAATCCTCTACTTTGCGTGTTACTGATAGCTCTCCATCTCCTCTTTCTCTCTTTTATCCAGTCAATAATAACTCAACATCAATAACTGGACAATCAACAGAAGTTATGGGTGATCGTACACCATCATCTAGAAACTCTGGGGGAATCTCTATCAATGTCCTTTCTTCAATGGCTGATGAATATGGTGAGATCTCTACTTCAGTTATTGAAAAGCTTGCCGCCGCTGCTGCAGCTGAGCCATACGAATCTGTTTCTTGTGCTTTTGTATCATATGGGTCCAGTGCAAAGGATTTAGCTATTGGGTGGAAATATAGGAGCCGTCTGTGGTATGGCGTTGGCCTTCCTTCAAATAGAGCTTCATTTGGTGGTGGGGGGAGTGGATGGGATGTGTGGAAGTCTTCTTTGGAGAAAGATGCCAGTGGCAACTGGATTGAGCTTCCTTTGGTGAAGAAGTCTGTGGCAATGCTCCAATCATTGCTGCTAGATGATTCTGGGCTTGGTGGTGGTCTTGGTATAGGTAAAGGGTCAGGTACTGGAATGGGTGCAATGACAGCATTATACCAGTTATTAGACAGTGATCAACCATTCTTGTGCATACTTCGGATGGTTCTTCTTTCAATGAGGGAAGAGAATGGAGAGGAAGAAAATATACTGATCAGGGCTACAAATATTGACGATTCAATATCTGAAGGAGAGAAACCATGCTCAGCACTTTTATGGAGTGTTCTCTCACCTGTTCTGAACATGCCACTTTCTGATTCTAAGAGACAAAGAGTCTTGGTAGCATCATGTGTGATGTATTCTGAAGTATACCATGCTGTTAGCATAGACCGAAAGCCTCTTCGTAAGAAGTACCTTGAGGCTATTTTACCACCATTTGCTGCTGTCTTAAGAAAGTGGCGACCCCTTTTGGCTGGAATTCATGAACTTGCAACAGCTGATGGTTTAAATCCCCTTAATGTGGAAGATAATATATTGGCAGTTGAAATTGAGCCAGTTGAGGCTGCTCTTGCTATGATATCTCCTGCATGGGCTGCTGCTTTTGCATCTCCACCTGCTGCAATGGCATTGGCTATGATTGCAGCTGGTACTTCCGGTGTTGAAAGTCTTGCACCTTCAACAAGTGTCCAGCTTAGGCGAGATACCTCATTAATGGAACGCAAACAGGCTAGGCTTCATTCATTTTCAAGCTTTCAAAAACCTTCAGAAGTCCCCAGTAAAACACCACCCCTACCAAAGAACAAAGCTGCTACAAAAGCAGCTGCATTTGCTGCTGCTCGTGATCGGCAGCGATTTTCAAGGATTGGTTCCGGAAGAGGCCTTAGTGCTGTTGCAATGGCTACATCTGCACAGCGAAGGAGTGATAGGGATATGGAACGAGTTAAGAGGTGGAATATTACTGAAGCAATGGAAGTTGCATGGACAGAGTGTTTGCAGCCATTTGATACAAAGTCGGTATATGAGAAAGATTTTAATGCACTTTCTTATAAATTTATTGCTATTCTTGTTGCCAGTTTCGCCTCAGCAAGGAATATACAACGGTCTGAGGTTGACAGGCGTGCTAATGTAGATTTAATAACTCGCCATCGAATTAGTACTGGAATTCGTGCATGGTGCAAACTTGTTCACCAGTTAATTGAGACGAGAAGTCTTTTTGGGCCCTTTGCAGATCATTTATACAGCCCAATCCGTGTTTTCTGGAAGCTAGACTTTATGGAAAGTTCTTCCCGAATGAGAAGATATATGAAGAGGGATTACCGAGGATCTGATCATTTAGGTTGTGCAGCTAACTATGAGGATTACTCAGGGGATAAGAATTATCAGAGGACCCCTGTCTTGTCTGCAGAAGCAATCTCAATAGAGGCTATAAATAAAGACGAAGAACAGGTGGAAACTGAGAATTTGGATGCTAAGGGCAATAATATTGTAGAGAATCAACCTAGATCTTCTGATGCTGCGGATGAAATTGTACAAACGTCTTTAGAATCCAATGCTACTCAACTTCAAAGTCATAAAGAAGTTGTTCAGAGTTCTTCAGCCTTTGCACCTGGGACTATTCCGAGTGAGCGTGACGAAAAAATTTATGTCGAGCTACCATCATCAATGGTCCAGCCACTTCGGGTTTTACAGGGAACCTTCCAAGTAACCAGTAGGAGGATAAATTTTATAGTTGATAACAATGAGACCAGCCCTACTGTGGATGGCTTGAATTTCAATTCTGCAGTTGGGGACCAAGGAAAGAACCGCAGCTGGTTATTGTCATCTCTTCATCAAGTTTATAGCCGGAGATATCTTCTTAGAAGAAGTGCACTGGAGCTATTTATGGTGGACCGTTTGAACTTCTTCTTTGACTTTGGGAGTAGTGAAGGGCGGAGAAACGCATATCGAGCAATTGTTCATGCACGACCTCCTAATTTAAACAATATATATTTAGCAACACAGAAGCCTGATCAACTTTTAAAAAGAACTCAACTTATGGAGAGGTGGGCTAGGTGGGAGATCAGCAATTTTGAGTATTTAATGCAACTCAATACACTGGCCGGGCGTAGTTATAATGATTTAACACAGTATCCAGTTTTCCCCTGGATTATTTCAGATTACAGTTCAGAGAACTTGGATCTTTCTAATCCTTCTTCTTACCGGGATCTTTCAAAGGTTTTGTATTATCTTGTTAGGGTTGAACCATTCACTACCCTATCAATCAAACTACAGGGTGGAAAATTTGATCATGCAGATCGGATGTTTTTTGATATTTCTGCTACTTGGAATGGAGTTCTTGAAGACATGAGTGACCTTAAGGAATTGGTTCCTGAGCTATTTTACCTCCCTGAGGTCCTCACAAATGAAAATTCAATTGATTTTGGGACAACACAGTTGGGAGAAAAGCTTGATACTGTAAGACTTCCTGCCTGGGCTGAGAGTCCTGTTGATTTTGTGCATAAGCATAGGATGGCTCTGGAGAGTGAGTACGTGTCTGCTCATTTGCATGAGTGGATTGACCTTATATTTGGGTATAAGCAACAGGGCAAAGAGGCTATTGCAGCAAATAATGTTTTCTTTTATATTACTTATGAAGGGACAGTGGATATTGATAAAATTTCAGACCCGGTACAACAGCGGGCAACACAAGATCAGATTGCTTATTTTGGACAAACACCGTCCCAACTTCTGACTGTTCCTCACTTGAAGAGGATGCCTTTATCTGAAGTTCTTCACTTGCAGACAATATTCCGCAACCCAAAAGTAGTCCAACCGTATGTTGTTCCATCACCTGAACACTGCAATCTACCTGCGGCTGCCATTCAAGCATGTTCAGATATGATAGTGGTTGTTGATTGGAATGCGCCAGCAGCTCATGTTGCACAACACAAGTGGCAACCCAATACACCTGATGGCCATGGTACTCCATTCCTCTTTCAACATGGAAAAGCTGCATCAAGCTCTGGTGGCGGACTAATGCGCATGTTCAAAGGACCTACAGGGACTGGTGAAGATTGGCAATACCCTCAAGCATTGGCATTTGGTGTTTCTGGAATTAGAAGCCAGGCTATCATCTCAATAACTTGTGACCAAGAAATTATTACTGGTGGGCATGCCGACAATAGTATTAGGGTGATATCATCTGATGGAGCCAAAACCTTGGAAACAGCCCATGCGCACTGTGCTCCAGTAACTTGCCTCGGCCTTTCACCCGATAGTAAATACCTGGTTACAGGATCCCGAGATACGACAATATTACTCTGGAGAATACATACAGCACTTGCATCTCACTCAAATGTCATATCGGAATCTTCCACTGGGACTGGCACTCAGCCATCATCCAGCAGTAACTCTTCATCTCATTTGATAGAAAAGAATCGTAGACATCGTATTGAGGGTCCAATACAGGTACTTCAGGGGCACCAAAGTGAAATACGCAGTTGCTGTGTCAGCTCAGATCTTGGAATAGTAGTTTCCTGCTCCGACACAACAGATGTTCTCTTTCACTCTATAAGAACAGGGCGTTTAATTCGAAGGCTGGATGGTGTGGTGGCCCATACTGTTTGCCTTTCCTCTGAAGGGGTTATCATGACTTGGAATGAATCCCAGCATACTCTCAGTACCTTTACTATTAATGGTGTTCTGATTGCTACAACAGAATTATCTGTCTCTACCAGCATTAGTTGCATGGAAATTTCACACGATGGCAGGAACGCTTTGATTGGAATTAATTCTCTAACAAATGGTAGAACCAGTGGTGGGAATTTGCAGTCAAGTAAGGTAACTGCTGTTGATTTTCATTCAGAATCAGAAGAAACTCACGAGAGCAACCGAATAAATGTTCCAACACCATCAATTTGCTTCTTGGATTTGCACACTCTGGAGGTTTTCCATGTATTGACATTGAAAGAAGGACAAGATATTACAGCTCTTGCTCTAAACAAGGATAACACAAATCTTTTGGTTTCAACTTCAGATAAAAATCTAATTATTTTCACTGATCCAGCTTTAAGCTTGAAAGTGGTGAATCAAATGCTCAAGATTGGTTGGTAA 6696 0.4237 MLRRPAEVLGQVHVATRMRPVDALWAVAYGGPLSLLPLSISNIQENTLEPHQGNFSVSVATTSLAAPIFRIISTAIQYPRNSEELGRCRGPVVLSKILNYLLQTLSSLGIGRDDGVGDEELVAAVVSLCLSQKINHTLKLQLFTTLLLDIKIWSLCSYGIQKKLLSSLADLVFTESAVMRDANAIQVLLDGCRRCYWTVLEKDSVNTVPLTGATRPVGEVNALVDELLVVIELLIVAASPSLVSNDVRCLLGFIVDCPQPGQISRVLHLFYRLVIQPNTSRAHTFVEAFLACGGIETLLVLLQREAKTGEIAVQESVSKLPGLGTNETDASCEIIHTCEDDEGSDVRSEAILQDNDQGYESVDSCSNLDFGSPYRNISRTTSASEIPNVKNLGGISLSISSDSARKNVYNVDKSDGIVVGIIGLLGALVVSGHLRFGSRGVPDTTSNLLGVSRDGGGTMFDDRVSLLLFSLQKAFQAAPNRLMTNNVYTALLAASINASSTENGLNFHDLGHRFEHLQLLSVLLHSLPFAPRPLQSRALQDLLFLTCSHPENKGRLADMEEWPEWILEIMISNYELGPSKPSDLTSLGDIEDLLHKFLIIMLEDSMRQKDGWKDIEATIHCAEWLSIIGGSSTGEQRIRREESLPIFKRRLLGGLMDFAAKELQIQTQIIAEAAAGVAAVGLSPDDAKAEAENAAHLSVALVENAIVILMLVEDHLRLQSKQSSTLRVTDSSPSPLSLFYPVNNNSTSITGQSTEVMGDRTPSSRNSGGISINVLSSMADEYGEISTSVIEKLAAAAAAEPYESVSCAFVSYGSSAKDLAIGWKYRSRLWYGVGLPSNRASFGGGGSGWDVWKSSLEKDASGNWIELPLVKKSVAMLQSLLLDDSGLGGGLGIGKGSGTGMGAMTALYQLLDSDQPFLCILRMVLLSMREENGEEENILIRATNIDDSISEGEKPCSALLWSVLSPVLNMPLSDSKRQRVLVASCVMYSEVYHAVSIDRKPLRKKYLEAILPPFAAVLRKWRPLLAGIHELATADGLNPLNVEDNILAVEIEPVEAALAMISPAWAAAFASPPAAMALAMIAAGTSGVESLAPSTSVQLRRDTSLMERKQARLHSFSSFQKPSEVPSKTPPLPKNKAATKAAAFAAARDRQRFSRIGSGRGLSAVAMATSAQRRSDRDMERVKRWNITEAMEVAWTECLQPFDTKSVYEKDFNALSYKFIAILVASFASARNIQRSEVDRRANVDLITRHRISTGIRAWCKLVHQLIETRSLFGPFADHLYSPIRVFWKLDFMESSSRMRRYMKRDYRGSDHLGCAANYEDYSGDKNYQRTPVLSAEAISIEAINKDEEQVETENLDAKGNNIVENQPRSSDAADEIVQTSLESNATQLQSHKEVVQSSSAFAPGTIPSERDEKIYVELPSSMVQPLRVLQGTFQVTSRRINFIVDNNETSPTVDGLNFNSAVGDQGKNRSWLLSSLHQVYSRRYLLRRSALELFMVDRLNFFFDFGSSEGRRNAYRAIVHARPPNLNNIYLATQKPDQLLKRTQLMERWARWEISNFEYLMQLNTLAGRSYNDLTQYPVFPWIISDYSSENLDLSNPSSYRDLSKVLYYLVRVEPFTTLSIKLQGGKFDHADRMFFDISATWNGVLEDMSDLKELVPELFYLPEVLTNENSIDFGTTQLGEKLDTVRLPAWAESPVDFVHKHRMALESEYVSAHLHEWIDLIFGYKQQGKEAIAANNVFFYITYEGTVDIDKISDPVQQRATQDQIAYFGQTPSQLLTVPHLKRMPLSEVLHLQTIFRNPKVVQPYVVPSPEHCNLPAAAIQACSDMIVVVDWNAPAAHVAQHKWQPNTPDGHGTPFLFQHGKAASSSGGGLMRMFKGPTGTGEDWQYPQALAFGVSGIRSQAIISITCDQEIITGGHADNSIRVISSDGAKTLETAHAHCAPVTCLGLSPDSKYLVTGSRDTTILLWRIHTALASHSNVISESSTGTGTQPSSSSNSSSHLIEKNRRHRIEGPIQVLQGHQSEIRSCCVSSDLGIVVSCSDTTDVLFHSIRTGRLIRRLDGVVAHTVCLSSEGVIMTWNESQHTLSTFTINGVLIATTELSVSTSISCMEISHDGRNALIGINSLTNGRTSGGNLQSSKVTAVDFHSESEETHESNRINVPTPSICFLDLHTLEVFHVLTLKEGQDITALALNKDNTNLLVSTSDKNLIIFTDPALSLKVVNQMLKIGW 2231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g01348 2231 ProSiteProfiles Trp-Asp (WD) repeats profile. 1938 1979 IPR001680 GO:0005515
Trre15g01348 2231 CDD PH_BEACH 1413 1520 IPR023362 -
Trre15g01348 2231 MobiDBLite consensus disorder prediction 1982 2002 - -
Trre15g01348 2231 Pfam Beige/BEACH domain 1548 1607 IPR000409 -
Trre15g01348 2231 Pfam Beige/BEACH domain 1607 1785 IPR000409 -
Trre15g01348 2231 SUPERFAMILY WD40 repeat-like 1907 2213 IPR036322 GO:0005515
Trre15g01348 2231 SMART Beach_2 1547 1785 IPR000409 -
Trre15g01348 2231 ProSiteProfiles BEACH domain profile. 1535 1785 IPR000409 -
Trre15g01348 2231 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1938 1973 - -
Trre15g01348 2231 MobiDBLite consensus disorder prediction 1982 2005 - -
Trre15g01348 2231 PANTHER BEIGE/BEACH-RELATED 24 2216 - -
Trre15g01348 2231 SUPERFAMILY PH domain-like 1413 1520 - -
Trre15g01348 2231 SMART WD40_4 2012 2051 IPR001680 GO:0005515
Trre15g01348 2231 SMART WD40_4 1931 1970 IPR001680 GO:0005515
Trre15g01348 2231 SMART WD40_4 2174 2214 IPR001680 GO:0005515
Trre15g01348 2231 CDD Beach 1547 1785 IPR000409 -
Trre15g01348 2231 Gene3D - 1413 1519 IPR011993 -
Trre15g01348 2231 Gene3D - 1821 2068 IPR015943 GO:0005515
Trre15g01348 2231 Gene3D - 2069 2222 IPR015943 GO:0005515
Trre15g01348 2231 Gene3D BEACH domain 1608 1785 IPR036372 -
Trre15g01348 2231 Gene3D BEACH domain 1536 1607 IPR036372 -
Trre15g01348 2231 SUPERFAMILY BEACH domain 1527 1785 IPR036372 -
Trre15g01348 2231 ProSiteProfiles BEACH-type PH domain profile. 1410 1520 IPR023362 -
Trre15g01348 2231 Pfam Neurobeachin beta propeller domain 1903 2117 IPR046851 -
Trre15g01348 2231 Pfam Neurobeachin/BDCP, DUF4704 alpha solenoid region 4 307 IPR031570 -
Trre15g01348 2231 Pfam Neurobeachin/BDCP, DUF4704 alpha solenoid region 472 622 IPR031570 -
Trre15g01348 2231 Pfam PH domain associated with Beige/BEACH 1422 1520 IPR023362 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g01348 Trre-Chr15 10429475 10458586 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g01348 - - aprc:113851121 3348.53