Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g01328 ATGAACGGCGGTGGAGGTAACTTCCCTCCGTCGCAATCCAACGGCGGCGATTTCCTTCTCTCTCTTCTTCAAAAACCCCGTCCTCCTCAACCTTCATCCACTCCTCCTCAACAATCTCTCACCATAGATCCTGCTGTCGCCATGATGGGACCCACAATCCCCTTCTCCACATCACAATATCCATCCAACGGTCACGATCATCCCAATCTTCTTCATCCCCTTCATCATCATCAGAATCAGAACCTTCCACCATGGTCTCACACACCTTCTCCTTCTTACCCGCAAAACTCATTCGGGTTACTCCATAACCCGTTTTCACTTCCTCGGTTACCCGAAAACCATTTCACCAACACCACCACCACCACTCCACTTCACTTCTCTAACGGTATTTCCCTCGCCGACGATCTACGTAGATTAGGGTTTCCGATTGAAACTAACAACAATAACAGTTTCATTCACCATCAGCAACAGCAACAACAACAACAGGAATTGAAGTTACAGTTTGGATCTTTACCTACTGTTTCTTATGCTAATACTTCCTCTGAAGTTTCTTCCAATGGAAGCTTCAATGGATTTGATAGGAATAGTAGTAATAATAATCATGGAAGAGGGGTTATTGGTAATTTTAGGTCAACTGAACAAATTAGGGTTCCACCTGGATTTGGGAACAATGCAAGGGGAACAGGTTATTGGGGTTCAGAGGTTGGTGATGGTGAATTGGGTGGTAGGAATGAGGGTTTGTATAGTAAGAAAGAGAATGTGAGATTAGGGTTTGGTGAAAGGAGTAATGGATTGAGGCTTCCTGATCAGCTTGATCACCCTGGTCCACCTTCTGGGAGTGAACTTCATTCTGATTATGTTGATGTTGATGCTATTGGTGAACAGATAGCTGATTCGTTGTTGCTTGAGGACGAGCTTGATGATAAGTGTAGTAACTCTACTAAACGACATGGTCGTAAGGAGAAGGATGCTAGATTTTCAGACTCAAGAGGAAAGCAGTTGCTAAGCCAACAGGCAAGAACGTGTAAAAGACAAATGATGTGCCGTATGGATATAGATAGTCTTAGTGTTCCTTTCCTTTCAATATATGAGTCTTTAATACCACCAGAAGAAGAAAAACTGAAGCAGAAGCAATTGTTAGGGTTATTGGAGAAGTTAGTTTGCAAGGAGTGGCCAATGGCTCGGCTTTATCTCTATGGATCATGTGCTAATTCATTTGGTGTTTCTAAAAGCGACATTGATGTTTGCCTTGCTATTCAAGAAGCTGATATTGACAAGTCTAAGATTATAATGAAATTGGCTGATATTTTGCAATCAGATAACCTGCAGAATGTTCAGGCATTGACACGAGCAAGGGTTCCTATAGTAAAGCTCATGGATCCAGTTACAGGAATCTCTTGTGATATATGTATTAACAATCTCCTGGCTGTTGTAAATACAAAGCTTCTTCGGGATTATGCAAACATTGATGCAAGGTTACGGCAGCTGGCTTTTATCATTAAACATTGGGCAAAGTCAAGAGGAGTCAATGAAACATACCATGGGACCCTATCTAGCTATGCGTATGTTTTGATGTGCATTCATTTTCTACAACAGCGACGACCTGCTATCCTTCCATGTTTACAGGGGATGGAACCAACATACTCTGTGACTGTGGACAATGTTGATTGTGCATTCTTTGACAAAGTTGAAAAACTTGGTCACTTTGGACGACATAACAAGGAAACCATTGCTCATCTTGTGTGGGGATTTTTCTATTATTGGGCATATTGTCATGATTATGCAAATTCCGTTATATCTGTACGCACAGGAAGCACAATCAGCAAGCGAGATAAGGATTGGACAAGAAGGGTCGGTAATGATCGCCATCTGATATGTATAGAGGATCCTTTTGAAACATCTCATGATCTGGGTCGAGTGGTAGATAAACACAGCATCAAAGTTCTCCGAGAAGAGTTTGAACGTGCTGCTGATATTATGCAGTATGATCCAAATCCATGTGTTAAACTTTTTGAGCCATATGTTCGTAGCAGTTGA 2037 0.4188 MNGGGGNFPPSQSNGGDFLLSLLQKPRPPQPSSTPPQQSLTIDPAVAMMGPTIPFSTSQYPSNGHDHPNLLHPLHHHQNQNLPPWSHTPSPSYPQNSFGLLHNPFSLPRLPENHFTNTTTTTPLHFSNGISLADDLRRLGFPIETNNNNSFIHHQQQQQQQQELKLQFGSLPTVSYANTSSEVSSNGSFNGFDRNSSNNNHGRGVIGNFRSTEQIRVPPGFGNNARGTGYWGSEVGDGELGGRNEGLYSKKENVRLGFGERSNGLRLPDQLDHPGPPSGSELHSDYVDVDAIGEQIADSLLLEDELDDKCSNSTKRHGRKEKDARFSDSRGKQLLSQQARTCKRQMMCRMDIDSLSVPFLSIYESLIPPEEEKLKQKQLLGLLEKLVCKEWPMARLYLYGSCANSFGVSKSDIDVCLAIQEADIDKSKIIMKLADILQSDNLQNVQALTRARVPIVKLMDPVTGISCDICINNLLAVVNTKLLRDYANIDARLRQLAFIIKHWAKSRGVNETYHGTLSSYAYVLMCIHFLQQRRPAILPCLQGMEPTYSVTVDNVDCAFFDKVEKLGHFGRHNKETIAHLVWGFFYYWAYCHDYANSVISVRTGSTISKRDKDWTRRVGNDRHLICIEDPFETSHDLGRVVDKHSIKVLREEFERAADIMQYDPNPCVKLFEPYVRSS 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g01328 678 Gene3D - 490 658 - -
Trre15g01328 678 Pfam TUTase nucleotidyltransferase domain 370 469 IPR045100 GO:0016779
Trre15g01328 678 PANTHER POLY A POLYMERASE CID PAP -RELATED 137 663 - -
Trre15g01328 678 CDD NT_PAP_TUTase 384 487 - -
Trre15g01328 678 MobiDBLite consensus disorder prediction 1 19 - -
Trre15g01328 678 Pfam Cid1 family poly A polymerase 577 635 IPR002058 -
Trre15g01328 678 MobiDBLite consensus disorder prediction 310 332 - -
Trre15g01328 678 SUPERFAMILY Nucleotidyltransferase 353 488 IPR043519 -
Trre15g01328 678 FunFam Terminal uridylyltransferase cid1 376 489 - -
Trre15g01328 678 MobiDBLite consensus disorder prediction 1 70 - -
Trre15g01328 678 Gene3D Beta Polymerase, domain 2 376 489 IPR043519 -
Trre15g01328 678 MobiDBLite consensus disorder prediction 310 329 - -
Trre15g01328 678 MobiDBLite consensus disorder prediction 260 284 - -
Trre15g01328 678 FunFam Terminal uridylyltransferase cid1 490 658 - -
Trre15g01328 678 MobiDBLite consensus disorder prediction 182 205 - -
Trre15g01328 678 SUPERFAMILY PAP/OAS1 substrate-binding domain 492 661 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g01328 Trre-Chr15 10282654 10287391 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g01328 - - cam:101492938 1042.34
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g01328 15 10282654 10287391 Trre15g01328 15 10282654 10287391 ECH