Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g01305 ATGGCGGACAACAACAACAACAACAGCATCACCTCCCCACTCCTCACCTCCGATCACCTAATCGTCACAATCGACTCCGATTCCGTTTCCTCCACTACAACCGACACAACTCCAATTTCCAATCCGTTCATTGCGTTAGGTTGCAAAGATGGAGAGTTGACTGTTCCGGCGGCGATTACGGTGGACCCGTTCGATAACTATAAAGCAGGAATTGAAGGTTTATATGAATGGTTGAAGACGATACTGTGTCTACCTATAGCTTTGATTCGGTTAGTTATTTTTGGATTGTGTTTAGCGATTGGATATGTGGCTACTAAGCTAGCACTTTATGGTTGGAAAGATAAAGAAAATCCTATGCCTAAGTGGAGATGTAGAATTATGTGGGTCACTAGAATATCTGCCAGATTCATTCTCTTCTCTTTTGGTTATCATTGGATAAAACGGAAGGGAAAACCTGCCCCAAGGGATGTTGCTCCAATAATCGTATCTAATCATGTATCTTATATTGAGCCTATCTTCTATTTTTATGAATTATTTCCCACCATTGTAGCATCTGAGTCTCATGACTCCATACCTTTTGTTGGCACAATTATTAGAGCAATGCAGGTCATATATGTTAACAGGTTCTCACAATCATCAAGGAAGCAGGCTGTCAGAGAAATAAAGAGAAGGGCTTCTTGCGATAGATTTCCTCGAGTACTTTTATTTCCCGAGGGAACGACGACTAACGGTAGGAACCTTATTTCCTTCCAACTCGGCGCATTTATCCCTGGGTACCCAATCCAGCCTATAATTGTACGATATCCTCATGTGCACTTTGATCAATCTTGGGGTAATGTTTCTTTGGGTCAGCTTATGTTCAGGATGTTCACTCAATTCCACAATTTCTTTGAGGTTGAGTATCTTCCTGTCATTCCACCTCTTGATGATAAGGAAACCGCTGTGCATTTTCGTAAAAGGGCTAGCCATGCTATTGCAACTGCATTGAATACTGTCCAAACTGGACATTCTTATGGAGATATAATGCTTCATATGAAAGCTCAAGAAGCAAAACAGGAGAACCCCTCGAGGTATATGGTTGAAATGGCCAAGGTGGAATCATTATTCCATATCAGCAGCTTGGAAGCTGTGGAATTTTTGGATAAATTCTTAGCTATGAATCCCGATTCCAGTGGTTGTGTTCAATATCGAGACTTTTTGAGCGTTATAAGGCTCAAGGCTTGTCCTCTTTCTGAAAAGATATTTTCATTCATTGATGTGGAGAAGTGTGGGAAAATTACATTTAGACAGTTCTTGTACGGGTCTGCACATGTCATGAAGCAGTCAGGGTTCCATCAAGCTTGTGAAGCAGCCTTTGCTGAGTGTGGCGGTGCAGCAAAAGGCTATATCGTGGAAGAAGAATTACGAAACTTCATCCAATCTGCTATCCCCAGCTGGAATGAAGATGAGGTCCATGATCTATTTGTGTTATTTGATGTCGATAAAGATGGAAGAATTTACAAGGATGAATTTCTTTCATGCCTGAGACGAAATCCTCTTCTCGTTGCTATTTTCATACCTCAACCGCAGCACAAGGAATCATGTGGTAATGGAGTGCTAGAGATACTGTGA 1611 0.4146 MADNNNNNSITSPLLTSDHLIVTIDSDSVSSTTTDTTPISNPFIALGCKDGELTVPAAITVDPFDNYKAGIEGLYEWLKTILCLPIALIRLVIFGLCLAIGYVATKLALYGWKDKENPMPKWRCRIMWVTRISARFILFSFGYHWIKRKGKPAPRDVAPIIVSNHVSYIEPIFYFYELFPTIVASESHDSIPFVGTIIRAMQVIYVNRFSQSSRKQAVREIKRRASCDRFPRVLLFPEGTTTNGRNLISFQLGAFIPGYPIQPIIVRYPHVHFDQSWGNVSLGQLMFRMFTQFHNFFEVEYLPVIPPLDDKETAVHFRKRASHAIATALNTVQTGHSYGDIMLHMKAQEAKQENPSRYMVEMAKVESLFHISSLEAVEFLDKFLAMNPDSSGCVQYRDFLSVIRLKACPLSEKIFSFIDVEKCGKITFRQFLYGSAHVMKQSGFHQACEAAFAECGGAAKGYIVEEELRNFIQSAIPSWNEDEVHDLFVLFDVDKDGRIYKDEFLSCLRRNPLLVAIFIPQPQHKESCGNGVLEIL 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g01305 536 SUPERFAMILY Glycerol-3-phosphate (1)-acyltransferase 123 315 - -
Trre15g01305 536 CDD EFh 461 505 IPR002048 GO:0005509
Trre15g01305 536 CDD LPLAT_LPCAT1-like 134 342 IPR045252 GO:0008374
Trre15g01305 536 Pfam EF-hand domain pair 460 510 IPR002048 GO:0005509
Trre15g01305 536 SUPERFAMILY EF-hand 370 518 IPR011992 -
Trre15g01305 536 SMART plsc_2 159 269 IPR002123 GO:0016746
Trre15g01305 536 ProSiteProfiles EF-hand calcium-binding domain profile. 479 514 IPR002048 GO:0005509
Trre15g01305 536 Gene3D - 352 516 - -
Trre15g01305 536 PANTHER PHOSPHOLIPID ACYLTRANSFERASE 58 367 - -
Trre15g01305 536 Pfam Acyltransferase 158 263 IPR002123 GO:0016746
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g01305 Trre-Chr15 10093562 10103347 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g01305 111 332 Acyl Lipid Metabolism Gene Families AT1G80950 30.159 4.75e-30 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g01305 K13510 - gmx:100818109 847.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g01305 15 10093562 10103347 Trre15g01305 15 10093562 10103347 ECH