Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g01248 ATGGCTGCTACTACCTCTGCTTCATTCTCTCGCTTCTCCGTTATCTCAAAACCACCTTCCCAAACGCAATTTAACCTCTTCAACTTCCCTAATCGAACCGGCATTGACCGGTTCAGATGTTCAGCCGGTGAGGTCGGTTTATTCACGAAACTCGGCCGGTTACTGAAGGAGAAAGCGAAAAGCGATGTAGAGAAGGTATTCTCTGGTTTCTCGAAAACTCGCAACAACCTCTCCGTCATTGATGAGCTTCTCCTTTATTGGAACCTCTCCGATACTGATAAAGTCCTCGATGAACTCGAAGAGGCACTTTTAGTATCAGATTTTGGACCAAAAATTACTATAAAAATAGTGGAGAATTTGCGTGAGGATATACTTTCAGGGAAGCTTAAATCAGGGAGTGAGATAAAGGAAGCACTGAAGAGAAACGTTTTGGATTTGTTAAGCAATAAGGGGATTAAAACTGATCTTAAACTTGGAGTCAGGAAACCAGCCGTAATAATGATAGTTGGTGTTAATGGTGGTGGGAAGACAACATCTTTGGGAAAGCTGGCTTATAGATTGAAGAATGGAGGTGCTAAGATATTGTTGGCAGCTGGTGATACATTCAGAGCAGCTGCTAGTGATCAGCTAGAAATATGGGCTGAAAGGACTGGGTGTGAAATTGTTATGGCTGAAACTGAGAAAGCGAAGGCATCAGTAGTGCTTTCACAGGCTGTAAAAAGAGGAAAACAGGAAGGTTATGATATTGTATTATGTGATACATCTGGACGTTTACACACCAATTACAGGCTAATGGAAGAGTTAATTTCTTGTAAAAAGGCTGTTGCTAAAGTAGTTGCTGGTGCACCCAATGAGATCTTACTGGTTCTGGATGGGACCACCGGTTTGAATATGTTACCACAAGCCAGAGAATTCAATGAAGTTGTAGGTGTAACTGGCTTAATTTTGACCAAACTGGATGGTTCTGCAAGAGGTGGCTGTGTGGTCAGTGTGGTTGATGAGCTTGGAATCCCTGTAAAATTTGTGGGTGTTGGTGAAGGTGTTGAAGACCTTCAACCCTTTGATGCAGAAGCATTTGTCAATGCCATCTTACCGTAA 1098 0.4244 MAATTSASFSRFSVISKPPSQTQFNLFNFPNRTGIDRFRCSAGEVGLFTKLGRLLKEKAKSDVEKVFSGFSKTRNNLSVIDELLLYWNLSDTDKVLDELEEALLVSDFGPKITIKIVENLREDILSGKLKSGSEIKEALKRNVLDLLSNKGIKTDLKLGVRKPAVIMIVGVNGGGKTTSLGKLAYRLKNGGAKILLAAGDTFRAAASDQLEIWAERTGCEIVMAETEKAKASVVLSQAVKRGKQEGYDIVLCDTSGRLHTNYRLMEELISCKKAVAKVVAGAPNEILLVLDGTTGLNMLPQAREFNEVVGVTGLILTKLDGSARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVNAILP 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g01248 365 SMART AAA_5 162 335 IPR003593 GO:0016887
Trre15g01248 365 Pfam SRP54-type protein, GTPase domain 163 364 IPR000897 GO:0005525|GO:0006614
Trre15g01248 365 ProSitePatterns SRP54-type proteins GTP-binding domain signature. 338 351 IPR000897 GO:0005525|GO:0006614
Trre15g01248 365 FunFam Cell division FtsY, chloroplastic-like protein 53 154 - -
Trre15g01248 365 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 157 364 IPR027417 -
Trre15g01248 365 Gene3D - 155 364 IPR027417 -
Trre15g01248 365 SMART SRP54_3 163 365 IPR000897 GO:0005525|GO:0006614
Trre15g01248 365 NCBIfam signal recognition particle-docking protein FtsY 92 364 IPR004390 GO:0006614
Trre15g01248 365 CDD FtsY 164 363 - -
Trre15g01248 365 SMART SRP54_N_2 66 147 IPR013822 GO:0005525|GO:0006614
Trre15g01248 365 SUPERFAMILY Domain of the SRP/SRP receptor G-proteins 63 140 IPR036225 -
Trre15g01248 365 Pfam SRP54-type protein, helical bundle domain 92 141 IPR013822 GO:0005525|GO:0006614
Trre15g01248 365 PANTHER SIGNAL RECOGNITION PARTICLE RECEPTOR SUBUNIT ALPHA 46 364 - -
Trre15g01248 365 Gene3D - 53 154 IPR042101 -
Trre15g01248 365 FunFam Signal recognition particle receptor FtsY 156 365 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g01248 Trre-Chr15 9611161 9616044 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g01248 K03110 - gmx:100791073 600.897
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g01248 15 9611161 9616044 Trre15g01248 15 9611161 9616044 ECH