Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g01182 ATGGAGCATTTACATGATGAGGAAGCATCATCAAATAATGTTGATGAAGTAGAAGTCACTAATACTCCATTGATTTGTGGCCTTCCTGATGATATTTCTCTTTTGTGTCTGGCAAGAGTTCCTAGAAAATATCATTCTGTCCTTAAGGCTGTCTCAAAAAGATGGAGGGACTTGGTTTGCAGCGAAGAGTGGCTTTCTTATCGTAGGAAGCATAAACTTGACGAGACATGGATCTATGCTTTGTGCAGGGACAAATTGGATCACATTTGCTGTTATGTATTGGATCCAACCTCATCAAAAAAATCTTGGAAGCTCGTTCATGGGCTTCCGCACCACATCGTTAGAAGGAAAGGCATGGGTTTTGAAGCCTTGGAAAATAAGCTCTTCTTATTGGGTGGCTGTGGCTGGTCTGAAGATGCTACCGACGAGGTTTATTCATACAATGCTTCCTCGAACTCTTGGGTTGAAGCTGCTTCCTTGTCAACTGCTAGGTGCTACTTTGCTTGTGAAGTTATGGACGAAAAACTATATGCTATTGGTGGCATAGATTCAGTAGTTATGGATGGTAAAATATACATCCGATGCGGCAAATCTCCTGTAACACCTCATGTGTATGCTGTTGTATACGAACCATCAAGTGGCACATGGCAGCATGCAGATGCTGACATGGTTTCAGGATGGAGAGGTCCTGCAGTTGTTGTCAACGGAATCCTTTTTGTTTTGGATCAAAGTTCGGGAACTAGGCTGACAATGTGGCATAAAGAGAGACGCGAATGGATACTCGTTGGGAAGTTGTCACCATTGCTTACAAGACCACCCTGCCAACTTGTTCCAGTTGGTAAAAGCATTTATATTATTGGGAAAGGGCTTAGCACTGTGTCTGTTGATGTTGGTGATATTGGAAATATGGGAAGGGTGATGGTGGGTTCTTCTATACCCAAATTAGTCTTTGATTACAATGTAATTAGTTGTAAATGCTTGTCAATCTGA 990 0.4202 MEHLHDEEASSNNVDEVEVTNTPLICGLPDDISLLCLARVPRKYHSVLKAVSKRWRDLVCSEEWLSYRRKHKLDETWIYALCRDKLDHICCYVLDPTSSKKSWKLVHGLPHHIVRRKGMGFEALENKLFLLGGCGWSEDATDEVYSYNASSNSWVEAASLSTARCYFACEVMDEKLYAIGGIDSVVMDGKIYIRCGKSPVTPHVYAVVYEPSSGTWQHADADMVSGWRGPAVVVNGILFVLDQSSGTRLTMWHKERREWILVGKLSPLLTRPPCQLVPVGKSIYIIGKGLSTVSVDVGDIGNMGRVMVGSSIPKLVFDYNVISCKCLSI 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g01182 329 SMART kelc_smart 127 174 IPR006652 GO:0005515
Trre15g01182 329 SUPERFAMILY Kelch motif 88 289 IPR015915 GO:0005515
Trre15g01182 329 SUPERFAMILY F-box domain 22 66 IPR036047 GO:0005515
Trre15g01182 329 Pfam F-box domain 26 61 IPR001810 GO:0005515
Trre15g01182 329 Pfam Kelch motif 163 216 IPR006652 GO:0005515
Trre15g01182 329 Pfam Kelch motif 115 161 IPR006652 GO:0005515
Trre15g01182 329 SMART fbox_2 28 67 IPR001810 GO:0005515
Trre15g01182 329 CDD F-box_AtAFR-like 24 68 - -
Trre15g01182 329 PANTHER OS02G0202900 PROTEIN 182 300 IPR045887 -
Trre15g01182 329 Gene3D - 34 300 IPR015915 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g01182 Trre-Chr15 9211459 9213873 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g01182 28 185 Miscellaneous Gene Families AT4G33900 28.736 5.25e-10 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g01182 - - gmx:100798211 522.316
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g01182 15 9211459 9213873 Trre15g01182 15 9211459 9213873 ECH