Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g01176 ATGTCATTTATCTGTGGCTGTCCTATACTTGAGTGTGTTTATTGCTTGGGTTGTACTCGTTGGGCTTGGAAAAAATGTTTGTATACTGCAGGCTATGAGAGTGAAAATTGGGGTTTAGCTACTGCAGAAGAGTTTGAGCCTATACCTAGAATTTGTCGAGTAATCTTAGCTGTTTACGAAGATGATATTCGTAATCCGCAATGGGCTCCCCAAGGTGGTTATGGCATTAATCCTGATTGGATTGTCTTGCGGAAAGACTACGGGGATAACCAAGGTTGGGTTACTCCTTATATGATATACCTTGATCATGATCGTGGTGAGATTATATTGGCTGTTAGTGGACTCAATTTAGGAAAGGAAAGTGATTATGCAGTTTTGCTTGATAACAAACTAGGACAGACGGAATTTCATGGTGGATATGTTCATAATGGGTTATTGAAGGCAGCAGATTGGGTTTTTGATGCAGAATGTGACGTTTTGAGGAAGCTAATAGCAGAAAATCCAACTTATATGCTGACATTTATTGGACATTCGCTCGGAGCTGGGGTGGTGGCCTTGTTGACAATGCTAGCGATTCATAATCGTGACAAATTAGGGATACAAAGAAACAAGATAAAATGCTATGCGATTGCTCCTGCTCGATGCATGTCTCTCAATTTGGCCGTAAGATATGCGGATGTGATCAATTCTATCGTACTACAGGACGATTTTTTACCTCGAACAACCACTGCGGCTGAAACCCTCTACAAGTCACTTTTATGTTGGCCTTGTTTATTGTGTCTCCTTTGCTTAAAAGATACTTGCACACTGGAGGAGAAGAAGCTTAGAGATCCAAGGCGTCTGTACGCACCTGGTCGTCTCTATCACATTGTGGAGCGAAAGCCCTTCAGGTTTGGAAGATATCCACCGGTTGTTAGGACAGCAGTACCTGTTGATGGGAGATTTGATCATATAGTTATTTCTTGCAATGCAACTTCTGATCATGCCATCCTTTGGATAGAGAGGGAATCACGACGTGCTCTTGATTTAATGCTAGAGAAAGATCGGCATATGGAGATTCCAGCAGAGCAGAAGATGGTGAGGCAAGAATCTCTAGCTCGCGAACACAGTGAAGAGTATCGTGCAGCACTTCGGAGGGCAGTTGCTTTGGATATTCCTCAAGCATACTCACCTTCCTCATACGGAACATTTCACGAAATTGATGTTGAAGAGGATTCTGGAAGATCTAGTGACAAAGGCTCTTCCTTGTCACATAACAAACGATCAGAGAGTTGGAATGACTTTGTCGGGCGCATGTTTGATGTGGACGACACAGGTCATATGGTATTCAAGAAGACAACTCCTTAA 1347 0.4261 MSFICGCPILECVYCLGCTRWAWKKCLYTAGYESENWGLATAEEFEPIPRICRVILAVYEDDIRNPQWAPQGGYGINPDWIVLRKDYGDNQGWVTPYMIYLDHDRGEIILAVSGLNLGKESDYAVLLDNKLGQTEFHGGYVHNGLLKAADWVFDAECDVLRKLIAENPTYMLTFIGHSLGAGVVALLTMLAIHNRDKLGIQRNKIKCYAIAPARCMSLNLAVRYADVINSIVLQDDFLPRTTTAAETLYKSLLCWPCLLCLLCLKDTCTLEEKKLRDPRRLYAPGRLYHIVERKPFRFGRYPPVVRTAVPVDGRFDHIVISCNATSDHAILWIERESRRALDLMLEKDRHMEIPAEQKMVRQESLAREHSEEYRAALRRAVALDIPQAYSPSSYGTFHEIDVEEDSGRSSDKGSSLSHNKRSESWNDFVGRMFDVDDTGHMVFKKTTP 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g01176 448 Gene3D alpha/beta hydrolase 39 252 IPR029058 -
Trre15g01176 448 PANTHER ALPHA/BETA-HYDROLASES SUPERFAMILY PROTEIN 1 446 - -
Trre15g01176 448 MobiDBLite consensus disorder prediction 401 421 - -
Trre15g01176 448 Pfam Lipase (class 3) 119 242 IPR002921 GO:0006629
Trre15g01176 448 Pfam Lipase 3 N-terminal region 10 74 IPR005592 GO:0016042
Trre15g01176 448 CDD Lipase_3 44 240 - -
Trre15g01176 448 SUPERFAMILY alpha/beta-Hydrolases 43 243 IPR029058 -
Trre15g01176 448 MobiDBLite consensus disorder prediction 401 418 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g01176 Trre-Chr15 9168517 9172402 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g01176 1 445 Miscellaneous Gene Families AT4G00500 66.147 0.0 602
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g01176 - - gmx:100800227 774.237