Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g01103 ATGTCGTTTCTAAGGACCATACTCCGAACAACAACAACCCTTCACCGTTCATATCTTCAAAGACACATTCGTTCAATGAGCAATCTACCAGAAAACACAGTATATTCAGGACCAACACCTCAAAACAAAAGGGTAACACTTTCACAACTCCGACAAAAACATCGAAACTCAATACCAATCACAATGGTCACTGCTTATGATTACCCTTCTGCTGTTCACCTCGATATGGCCGCCATTGATATATGTCTTGTTGGTGATTCTGCTTCCATGGTTGTTCATGGTCACGACACTACTTTACCTATTACTTTAGATGAAATGCTTGTTCATTGTCGTGCTGTTGCTCGTGGTGCTAAAACTCCTCTTCTTGTTGGTGATTTGCCTTTTGGAACCTATGAATGTAGTTCTAAACAGGCAGTGGACGCAGCAGTTCGGATTTTGAAAGAAGGAGGAATGGATGCCATAAAATTGGAAGGAGGTTCACCATCAAGAATTGTTGCAGCAAAAGCTATTGTTGAAGCTGGAATAGCCGTTATTGGGCATGTTGGTCTTACTCCACAGGCTATTAGTGTTTTAGGTGGATTTAGGCCTCAAGGAAGGAATGTTGCTAGTGCTGTCAAGGTTGTTGAGACGGCACTGGCTTTGCAGGAAGCAGGGTGTTTTGCTGTTGTTTTAGAATGTGTGCCTGCACCTGTGGCTGCCGCAGCAACAGCAGCGCTTGAAATTCCGACTATTGGAATTGGGGCTGGACCCTATTGCAGTGGACAGGTACTTGTTTATCATGATCTTCTTGGTATGTTACAGCACCCCCACCATGCAAAGGTTACTCCAAAGTTCTGTAAACAATACGCTCGTGTCGGAGACGTCATCAACAAAGCCTTACTTGATTATAAGGAAGATGTGATAAATGGTTCATTTCCTGATGCTCAACACAGTCCTTACAAAATCAATGAAACTGATGCTAATGGTTTCTTAAATGAGCTGCAAAAGTTAGGTTTTGACAAGGCAGCATCTGCAGCGTCCGAAGCAGTTCAGAAGATGGTTACAAAATCAACAAAGTGA 1059 0.4287 MSFLRTILRTTTTLHRSYLQRHIRSMSNLPENTVYSGPTPQNKRVTLSQLRQKHRNSIPITMVTAYDYPSAVHLDMAAIDICLVGDSASMVVHGHDTTLPITLDEMLVHCRAVARGAKTPLLVGDLPFGTYECSSKQAVDAAVRILKEGGMDAIKLEGGSPSRIVAAKAIVEAGIAVIGHVGLTPQAISVLGGFRPQGRNVASAVKVVETALALQEAGCFAVVLECVPAPVAAAATAALEIPTIGIGAGPYCSGQVLVYHDLLGMLQHPHHAKVTPKFCKQYARVGDVINKALLDYKEDVINGSFPDAQHSPYKINETDANGFLNELQKLGFDKAASAASEAVQKMVTKSTK 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g01103 352 FunFam 3-methyl-2-oxobutanoate hydroxymethyltransferase 42 317 - -
Trre15g01103 352 NCBIfam 3-methyl-2-oxobutanoate hydroxymethyltransferase 45 311 IPR003700 GO:0003864|GO:0015940
Trre15g01103 352 CDD KPHMT-like 47 306 IPR003700 GO:0003864|GO:0015940
Trre15g01103 352 Pfam Ketopantoate hydroxymethyltransferase 44 307 IPR003700 GO:0003864|GO:0015940
Trre15g01103 352 PANTHER 3-METHYL-2-OXOBUTANOATE HYDROXYMETHYLTRANSFERASE 18 329 IPR003700 GO:0003864|GO:0015940
Trre15g01103 352 SUPERFAMILY Phosphoenolpyruvate/pyruvate domain 44 310 IPR015813 GO:0003824
Trre15g01103 352 Gene3D - 42 323 IPR040442 -
Trre15g01103 352 Hamap 3-methyl-2-oxobutanoate hydroxymethyltransferase [panB]. 45 312 IPR003700 GO:0003864|GO:0015940
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g01103 Trre-Chr15 8558833 8561323 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g01103 K00606 - gmx:100808841 549.666