Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g01040 ATGGCTTCGGAAGATGTGAAAACTGGTGAATCAGCTGTAACGAAGATCGTGAATTTGGCGGAAGAAGCGAAGCTCGCTAGAGAAGGTGTTGTTAAAGCTCCTAACTATGCAATCGGTAGCATCTGCAAGTCTCTCGTTGCTGGTGGAGTCGCAGGAGGAGTATCACGAACAGCGGTTGCTCCGCTGGAACGAATGAAAATTTTGCTGCAGGTCCAGAATCCTCATAACATAAAATACAATGGAACAATACAAGGCCTCAAATATATATGGAGAACTGAAGGGTTCCGTGGACTGTTTAAGGGAAATGGTACTAATTGTGCTCGAATTGTCCCAAATTCTGCAGTGAAGTTCTTCAGTTATGAGCAAGCTTCTAAAGGCATACTTCATCTGTATCAGCAGCAAACTGGAAATGAGGATGCTCAACTGACTCCTGTTTTACGTCTTGGAGCTGGAGCATGTGCTGGAATAATTGCTATGTCTGCAACTTATCCGATGGATATGGTCCGAGGCAGGATAACTGTACAGACTGAGAAATCCCCTTATCAGTACAGAGGAATGTTCCATGCTTTGACTACCGTGCTTAAGGAAGAAGGTCCACGTGCTTTATATAAGGGCTGGCTTCCCTCAGTAATTGGAGTTGTTCCTTATGTGGGTCTCAACTTTGCTGTCTACGAGTCTCTAAAAGATTGGTTGATTAAATCCAGACCATTTGGTCTAGTCCAGGATTCTGAGTTGAGTGTGACAACACGTCTTGCTTGTGGTGCTGCTGCTGGAACCATTGGACAAACTGTCGCTTACCCTCTTGATGTCATTCGTCGAAGAATGCAGATGACTGGTTGGAGCCATGCTGCTTCTGTTATAACTGGAGATGGAAGAGGCAAAGTCCCACTTGAATATACTGGAATGATTGATGCATTTAGGAAAACTGTTCGACACGAGGGATTCGGTGCATTATACAAGGGACTGGTTCCCAATTCTGTAAAGGTGGTCCCATCCATAGCACTTGCGTTTGTATCATATGAGATGGTGAAGGACATTTTAGGAGTGGAGATCAGAATATCAGACTAA 1068 0.4438 MASEDVKTGESAVTKIVNLAEEAKLAREGVVKAPNYAIGSICKSLVAGGVAGGVSRTAVAPLERMKILLQVQNPHNIKYNGTIQGLKYIWRTEGFRGLFKGNGTNCARIVPNSAVKFFSYEQASKGILHLYQQQTGNEDAQLTPVLRLGAGACAGIIAMSATYPMDMVRGRITVQTEKSPYQYRGMFHALTTVLKEEGPRALYKGWLPSVIGVVPYVGLNFAVYESLKDWLIKSRPFGLVQDSELSVTTRLACGAAAGTIGQTVAYPLDVIRRRMQMTGWSHAASVITGDGRGKVPLEYTGMIDAFRKTVRHEGFGALYKGLVPNSVKVVPSIALAFVSYEMVKDILGVEIRISD 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g01040 355 SUPERFAMILY Mitochondrial carrier 41 342 IPR023395 -
Trre15g01040 355 FunFam Mitochondrial substrate carrier 37 349 - -
Trre15g01040 355 ProSiteProfiles Solute carrier (Solcar) repeat profile. 39 126 IPR018108 -
Trre15g01040 355 PANTHER SOLUTE CARRIER FAMILY 25 40 349 - -
Trre15g01040 355 Gene3D Mitochondrial carrier domain 38 349 IPR023395 -
Trre15g01040 355 ProSiteProfiles Solute carrier (Solcar) repeat profile. 245 346 IPR018108 -
Trre15g01040 355 ProSiteProfiles Solute carrier (Solcar) repeat profile. 142 230 IPR018108 -
Trre15g01040 355 Pfam Mitochondrial carrier protein 142 234 IPR018108 -
Trre15g01040 355 Pfam Mitochondrial carrier protein 41 126 IPR018108 -
Trre15g01040 355 Pfam Mitochondrial carrier protein 244 347 IPR018108 -
Trre15g01040 355 PRINTS Mitochondrial carrier protein signature 203 221 IPR002067 GO:0055085
Trre15g01040 355 PRINTS Mitochondrial carrier protein signature 44 57 IPR002067 GO:0055085
Trre15g01040 355 PRINTS Mitochondrial carrier protein signature 57 71 IPR002067 GO:0055085
Trre15g01040 355 PRINTS Mitochondrial carrier protein signature 157 175 IPR002067 GO:0055085
Trre15g01040 355 PRINTS Mitochondrial carrier protein signature 101 121 IPR002067 GO:0055085
Trre15g01040 355 PRINTS Mitochondrial carrier protein signature 254 276 IPR002067 GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g01040 Trre-Chr15 8087704 8092626 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g01040 16 350 EF-hand Containing Proteins AT5G51050 37.168 4.40e-68 220
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g01040 K14684 - gmx:100814032 662.529
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g01040 15 8087704 8092626 Trre15g01040 15 8087704 8092626 ECH