Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g01004 ATGATACTCATAGGATTCATCATCTTTACAGCTACACTCATCACTGCCATAATCATCAAACTCTGTTTTTCAGCAATCAACGGTAGACGAAACAGGAAAACTGCGGTGGGTTTCTTCCATCCATACACCAACGACGGTGGCGGCGGAGAAAGAGTTCTATGGTGTGCTGTTAAAGCTATCCAAGAAGAGAATCCTGATCTTCAATGCCTTGTTTATACTGGAGATCACGATTCTACACCTCAATCGTTGTTGAATCGTGCAATTGATCGCTTTGGTGTTAAGCTTCTATCCCCTCCTAAGGTGGTGCATTTGTACAAGAGGAAGTGGATTGAAGAAACGACTTATCCACACTTTACTATGATTGGTCAAAGTCTAGGCTCTATGTATCTTGGATGGGAAGCTTTGTGCAAGTTCACCCCTTTATATTATTTTGATACAAGTGGTTATGCTTTTACATATCCACTTGCTAGGTTGTTTGGATGCAAAGTTATTTGCTATACACATTATCCTACTATCAGTTCAGACATGCTATCTCGCGTTCGTCAACGCAGCTTGATGTATAATAATGATTCCTTGGTTGCCAAAAGTGTTTGGCTTTCTCGGTGCAAAATAATCTATTACACATTCTTCAGCTGGTTGTATGGGATTGTTGGATCTTGTACACACCTAGCTATGGTCAATTCATCTTGGACCAAAGCCCATATTGAAAAGCTTTGGGGAGTTCCAGATCGGATTAAGCGAGTTTATCCTCCTTGTGATACTTCAGGACTTCAGGTGCTTCCTTTGGAAAGATCAGCTGAAATTCCTGTAATAATATCGGTTGCACAATTTCGACCAGAGAAGGCTCACAGTCTCCAACTCGAGGCCTTTTCACTTGCCATTAAGAGATTGGAGTCTGCCTTGCCGAAACCTAAGCTCCAGTTTGTTGGTAGCTGTAGAAATAAATCAGATGACGAAAGACTGCAAAGGTTAAAAGACAAAGCAATTGAGCTGAATGTGAATGAACAAGTGGAATTCCACAAGAATGTAACATACAGAGATTTGGTGGGACTTTTAGGCGGCGCTGTTTCCGGCATCCATTCAATGACCGATGAGCATTTTGGCATTAGTGTTGTAGAATATATGGCTGCTGGTGCCATCCCAATTGCTCATAATTCAGCCGGCCCAAAAATGGACATTGTATTGGACGAAGATGGACAACAAACAGGGTTTCTCGCCTGCACTGTTGAAGAATATGCAGACGCCATCTTTAATGTCATTAAGATGTCAGAAACAGAAAGGCTAAAGATGGCTGCTGCTGCAAGAAGACGAGCAAGCAGGTTTTCTGAGCAGCGGTTTTGTGATGACTTCAAAGCCGCAGTACGCCCTATTATCAGTCGTGCTTCTAGATAA 1392 0.4224 MILIGFIIFTATLITAIIIKLCFSAINGRRNRKTAVGFFHPYTNDGGGGERVLWCAVKAIQEENPDLQCLVYTGDHDSTPQSLLNRAIDRFGVKLLSPPKVVHLYKRKWIEETTYPHFTMIGQSLGSMYLGWEALCKFTPLYYFDTSGYAFTYPLARLFGCKVICYTHYPTISSDMLSRVRQRSLMYNNDSLVAKSVWLSRCKIIYYTFFSWLYGIVGSCTHLAMVNSSWTKAHIEKLWGVPDRIKRVYPPCDTSGLQVLPLERSAEIPVIISVAQFRPEKAHSLQLEAFSLAIKRLESALPKPKLQFVGSCRNKSDDERLQRLKDKAIELNVNEQVEFHKNVTYRDLVGLLGGAVSGIHSMTDEHFGISVVEYMAAGAIPIAHNSAGPKMDIVLDEDGQQTGFLACTVEEYADAIFNVIKMSETERLKMAAAARRRASRFSEQRFCDDFKAAVRPIISRASR 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g01004 463 Pfam Glycosyl transferases group 1 269 436 IPR001296 GO:0016757
Trre15g01004 463 Pfam ALG11 mannosyltransferase N-terminus 34 239 IPR031814 -
Trre15g01004 463 FunFam GDP-Man:Man(3)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase 260 441 - -
Trre15g01004 463 PANTHER GDP-MAN:MAN(3)GLCNAC(2)-PP-DOL ALPHA-1,2-MANNOSYLTRANSFERASE 10 459 IPR038013 GO:0004377
Trre15g01004 463 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 38 458 - -
Trre15g01004 463 CDD GT4_ALG11-like 35 449 IPR038013 GO:0004377
Trre15g01004 463 Gene3D Glycogen Phosphorylase B; 257 441 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g01004 Trre-Chr15 7845433 7849613 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g01004 272 459 Glycosyltransferase AT1G78800 28.125 8.09e-08 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g01004 K03844 - gmx:100801617 795.423
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g01004 15 7845433 7849613 Trre15g01004 15 7845433 7849613 ECH